View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19651_high_17 (Length: 278)
Name: NF19651_high_17
Description: NF19651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19651_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 262
Target Start/End: Original strand, 30302562 - 30302806
Alignment:
| Q |
18 |
agatatacacacacctcatgtcctcttaatttcagctccatatctaagagccattcaataagaaaaacagtgaaagcatttctcttcctcttgattatat |
117 |
Q |
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| T |
30302562 |
agatatatacacacctcatgtcctcttaatttcagctccatatctaaaagccattcagtgagaaaaacagtgaaagtacttctcttcctcttgattattt |
30302661 |
T |
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| Q |
118 |
tttgtgctttccagacaaattctaaggggttagataggctggcttggcacaactttgggattggtatatgtaagaaagaaatatgatttccccaaggaga |
217 |
Q |
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| T |
30302662 |
tctgtgctttccaaacaaaatctaaggggttagataggctgggttggcacaactttgggattggtatatgtaagaaagaaatatgattcccccaaggaga |
30302761 |
T |
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| Q |
218 |
ttttgaatcagcctttgtcatatcttggattgattggtaacttcc |
262 |
Q |
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| T |
30302762 |
ttttgaatcagcctttgtcatatcttggattgattggtaacttcc |
30302806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 20 - 262
Target Start/End: Original strand, 30263319 - 30263561
Alignment:
| Q |
20 |
atatacacacacctcatgtcctcttaatttcagctccatatctaagagccattcaataagaaaaacagtgaaagcatttctcttcctcttgattatattt |
119 |
Q |
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| T |
30263319 |
atatatacccacctcatgtcctcttaatttcagctgcatatctaaaagccattcagtgagaaaaacagtgaaagtacttctcttcctcttgattattttc |
30263418 |
T |
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| Q |
120 |
tgtgctttccagacaaattctaaggggttagataggctggcttggcacaactttgggattggtatatgtaagaaagaaatatgatttccccaaggagatt |
219 |
Q |
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| T |
30263419 |
tgtgctttccaaacaaaatctaaggggttagataggctgggttggcttaactttgggattggtatatgtaagaaagaaatatgattcccccaaggagatt |
30263518 |
T |
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| Q |
220 |
ttgaatcagcctttgtcatatcttggattgattggtaacttcc |
262 |
Q |
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| T |
30263519 |
ttgaatcagcctttgtcatatcttggattgattggtaacttcc |
30263561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 18 - 262
Target Start/End: Original strand, 30270228 - 30270472
Alignment:
| Q |
18 |
agatatacacacacctcatgtcctcttaatttcagctccatatctaagagccattcaataagaaaaacagtgaaagcatttctcttcctcttgattatat |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| | |
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| T |
30270228 |
agatatacacacacctcatgtcctcttaatttcagctccatatctaagagccattcaataagaaaaacagtaaaagtatttctcttcctcttgattattt |
30270327 |
T |
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| Q |
118 |
tttgtgctttccagacaaattctaaggggttagataggctggcttggcacaactttgggattggtatatgtaagaaagaaatatgatttccccaaggaga |
217 |
Q |
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||||||||||||| | ||| || |||||||||||||| ||||| | || ||||| ||||||| || |||||||||||||||||| || ||||||||||| |
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| T |
30270328 |
tttgtgctttccaaataaactccaaggggttagatagactggccttgcttaacttggggattgatacatgtaagaaagaaatatggttcccccaaggaga |
30270427 |
T |
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| Q |
218 |
ttttgaatcagcctttgtcatatcttggattgattggtaacttcc |
262 |
Q |
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| T |
30270428 |
ttttgaatctgcctttgtcatatcttgaattgattggtaacttcc |
30270472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 30281961 - 30281717
Alignment:
| Q |
18 |
agatatacacacacctcatgtcctcttaatttcagctccatatctaagagccattcaataagaaaaacagtgaaagcatttctcttcctcttgattatat |
117 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| | |
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| T |
30281961 |
agatatacacacacctcatgtcctcttaatttcagctccatatctaagagccattcaataagaaaaacagtaaaagtatttctcttcctcttgattattt |
30281862 |
T |
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| Q |
118 |
tttgtgctttccagacaaattctaaggggttagataggctggcttggcacaactttgggattggtatatgtaagaaagaaatatgatttccccaaggaga |
217 |
Q |
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||||||||||||| | ||| || |||||||||||||| ||||| | || ||||| ||||||| || |||||||||||||||||| || ||||||||||| |
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| T |
30281861 |
tttgtgctttccaaataaactccaaggggttagatagactggccttgcttaacttggggattgatacatgtaagaaagaaatatggttcccccaaggaga |
30281762 |
T |
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| Q |
218 |
ttttgaatcagcctttgtcatatcttggattgattggtaacttcc |
262 |
Q |
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| T |
30281761 |
ttttgaatctgcctttgtcatatcttgaattgattggtaacttcc |
30281717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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