View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19651_high_18 (Length: 270)
Name: NF19651_high_18
Description: NF19651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19651_high_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 29 - 255
Target Start/End: Complemental strand, 2691785 - 2691559
Alignment:
| Q |
29 |
atatgttgtggatacacgtaacgtagatacgaatcttataaaaagattaaaggtatattatatttgcagtgtatccaataaagttatagacaannnnnnn |
128 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2691785 |
atatattgtggatacacgtaacgtagatacgaatcttataaaaagattaaaggtatattatatttgcagtgtatccaataaagttatagacaattttttt |
2691686 |
T |
|
| Q |
129 |
ncataaagatgcaaatactaacctgatagaggtgcaagttaatctcatcataagtctcatgtaatgttttgaaaggagcaccactaagctcaatttgtcc |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2691685 |
tcataaagatgcaaatactaacctgatagaggtgcaagttaatctcatcataagtctcatgcaatgttttgaaaggagcaccactaagctcaatttgtcc |
2691586 |
T |
|
| Q |
229 |
accaggctccaatgatatgctttgctt |
255 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
2691585 |
accaggctccaatgatatgctttgctt |
2691559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 138 - 252
Target Start/End: Complemental strand, 2673575 - 2673461
Alignment:
| Q |
138 |
tgcaaatactaacctgatagaggtgcaagttaatctcatcataagtctcatgtaatgttttgaaaggagcaccactaagctcaatttgtccaccaggctc |
237 |
Q |
| |
|
|||| ||||| |||||||||||||| | |||||||| |||||||||| ||| |||||||| ||||| ||||||||||| |||||||| |||||| || |
|
|
| T |
2673575 |
tgcatatactgacctgatagaggtgtgaattaatctcgtcataagtctgatgcaatgttttcaaaggcgcaccactaagttcaatttgaccaccatattc |
2673476 |
T |
|
| Q |
238 |
caatgatatgctttg |
252 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
2673475 |
caatgatatgctttg |
2673461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 254
Target Start/End: Complemental strand, 655787 - 655753
Alignment:
| Q |
220 |
aatttgtccaccaggctccaatgatatgctttgct |
254 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
|
|
| T |
655787 |
aatttgtccaccaggctccaatgatatcctttgct |
655753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University