View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19651_high_20 (Length: 265)
Name: NF19651_high_20
Description: NF19651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19651_high_20 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 48254179 - 48254426
Alignment:
| Q |
1 |
cttgcttgcagcttctgtagcatgaatcccatcccaactcacatagttgtaagggtcatcacatgctgttgctgtcactctttttccatttatctccttt |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48254179 |
cttgcttgcagcttctgtggcatgaatcccatcccaactcacatagttgtaagggtcatcacatgctgttgctgtcactctttttccatttatctccttt |
48254278 |
T |
|
| Q |
101 |
gtatttccacaatacactttaggatcgaagttgtattcacctccaccatatccacaacatgcttttgtaccatattgaagacctgtttcatgtaagaaac |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
48254279 |
gtatttccacaatacactttaggattgaagttgtattcacctccaccatatccacaacatgcttttgtaccatattgaagacctgtttcatgtaacaaac |
48254378 |
T |
|
| Q |
201 |
nnnnnnncatttaagggatcattacgattaacaatgttcttttaaaac |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48254379 |
aaaaaaacatttaagggatcattacgattaacaatgttcttttaaaac |
48254426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University