View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19651_high_22 (Length: 251)
Name: NF19651_high_22
Description: NF19651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19651_high_22 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 45273791 - 45273547
Alignment:
| Q |
1 |
tcattcatccagatggatggaccatttggcaaggagaacaaaatcacaacacatgttactatgcagagtatgccaacactggacctggtgccaatgttgc |
100 |
Q |
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| T |
45273791 |
tcattcatccagatggatggaccatttggcaaggagaacaaaatcacaacacatgttactatgcagagtatgcaaacaccggacctggtgccaatgttgc |
45273692 |
T |
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| Q |
101 |
taggagggtcaagtggaggggttatcacggtgtcattagcagggccgaggctaacaaattcacagctggtatatggctccaagctggacccaagtctgca |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45273691 |
gaggagggtcaagtggaagggttatcacggtgtcattagcagggccgaggctaacaaattcacagctggtatatggctccaagctggacccaagtctgca |
45273592 |
T |
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| Q |
201 |
gctgaatggttgaatggtcttcatgttcctcactacctttgcttc |
245 |
Q |
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| T |
45273591 |
gctgaatggttgaatggtcttcatgttcctcactaccttggcttc |
45273547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 45282035 - 45281791
Alignment:
| Q |
1 |
tcattcatccagatggatggaccatttggcaaggagaacaaaatcacaacacatgttactatgcagagtatgccaacactggacctggtgccaatgttgc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
45282035 |
tcattcatccagatggatggaccatttggcaaggagaacaaaatcacaacacatgttactatgcagagtatgcaaacaccggacctggtgccaatgttgc |
45281936 |
T |
|
| Q |
101 |
taggagggtcaagtggaggggttatcacggtgtcattagcagggccgaggctaacaaattcacagctggtatatggctccaagctggacccaagtctgca |
200 |
Q |
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| T |
45281935 |
gaggagggtcaagtggaagggttatcacggtgtcattagcagggccgaggctaacaaattcacagctggtatatggctccaagctggacccaagtctgca |
45281836 |
T |
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| Q |
201 |
gctgaatggttgaatggtcttcatgttcctcactacctttgcttc |
245 |
Q |
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| T |
45281835 |
gctgaatggttgaatggtcttcatgttcctcactaccttggcttc |
45281791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 3 - 245
Target Start/End: Complemental strand, 45293373 - 45293131
Alignment:
| Q |
3 |
attcatccagatggatggaccatttggcaaggagaacaaaatcacaacacatgttactatgcagagtatgccaacactggacctggtgccaatgttgcta |
102 |
Q |
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| T |
45293373 |
attcatccagatggatggaccccttggcaaggagaacattttgaaaacacatgttactatgcagagtacgccaacactggacctggtgccaatattgcca |
45293274 |
T |
|
| Q |
103 |
ggagggtcaagtggaggggttatcacggtgtcattagcagggccgaggctaacaaattcacagctggtatatggctccaagctggacccaagtctgcagc |
202 |
Q |
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||||| ||||||||| |||||||||||||| |||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||| ||||| |
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| T |
45293273 |
ggaggatcaagtggaagggttatcacggtgccattagcagggccgaggctaccaaattcactgctggtttatggctccaagctggacccaagtccgcagc |
45293174 |
T |
|
| Q |
203 |
tgaatggttgaatggtcttcatgttcctcactacctttgcttc |
245 |
Q |
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|||||||||| ||||||| |||||||| | |||||| ||||| |
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| T |
45293173 |
cgaatggttgactggtcttaatgttcctaattaccttggcttc |
45293131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 3 - 245
Target Start/End: Complemental strand, 45302333 - 45302091
Alignment:
| Q |
3 |
attcatccagatggatggaccatttggcaaggagaacaaaatcacaacacatgttactatgcagagtatgccaacactggacctggtgccaatgttgcta |
102 |
Q |
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||||||||||||||||||||| ||||||||||||||| | | ||||||||||||||||||||||| |||||||||||||||||||||||| |||| | |
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| T |
45302333 |
attcatccagatggatggaccccttggcaaggagaacattttgaaaacacatgttactatgcagagtacgccaacactggacctggtgccaatattgcca |
45302234 |
T |
|
| Q |
103 |
ggagggtcaagtggaggggttatcacggtgtcattagcagggccgaggctaacaaattcacagctggtatatggctccaagctggacccaagtctgcagc |
202 |
Q |
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||||| ||||||||| |||||||||||||| |||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||| ||||| |
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| T |
45302233 |
ggaggatcaagtggaagggttatcacggtgccattagcagggccgaggctaccaaattcactgctggtttatggctccaagctggacccaagtccgcagc |
45302134 |
T |
|
| Q |
203 |
tgaatggttgaatggtcttcatgttcctcactacctttgcttc |
245 |
Q |
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|||||||||| ||||||| |||||||| | |||||| ||||| |
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| T |
45302133 |
cgaatggttgactggtcttaatgttcctaattaccttggcttc |
45302091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 48 - 245
Target Start/End: Complemental strand, 45270194 - 45269985
Alignment:
| Q |
48 |
aacacatgttactatgcagagtatgccaacactggacctggtgccaatgttgctaggagggtcaagtggaggggttatcacggtgtcattagcagggccg |
147 |
Q |
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||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| | ||||||||||||||| || |
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| T |
45270194 |
aacacgtgttactttgcagagtatgccaacactggacctggtgccaatgttgcgaggagggtcaagtggaagggttataagggtgtcattagcaggagcg |
45270095 |
T |
|
| Q |
148 |
aggctaacaaattcacagctggtatatggctccaagctgg------------acccaagtctgcagctgaatggttgaatggtcttcatgttcctcacta |
235 |
Q |
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|||||| ||||| ||| || ||||||||||| | ||||| |||||||||||||| |||||||||| | | |||||||||||||||||| |
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| T |
45270094 |
aggctaccaaatacaccgccagtatatggctcgatgctggaccgaagactgcacccaagtctgcagttgaatggttgcacgatcttcatgttcctcacta |
45269995 |
T |
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| Q |
236 |
cctttgcttc |
245 |
Q |
| |
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|||| ||||| |
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| T |
45269994 |
ccttggcttc |
45269985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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