View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19651_high_26 (Length: 244)
Name: NF19651_high_26
Description: NF19651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19651_high_26 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 26801647 - 26801874
Alignment:
| Q |
1 |
caatgaactccaagtaaactatagtcagcacattagttatattacatatgcttttaagcatacataataataactttcaatttatgtcttgagaacttgt |
100 |
Q |
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| T |
26801647 |
caatgaactccaagtaaactatagtcagcacattagttatattacatatgcttttaagcatacataataataactttcaatttatgtcttgagaacttgt |
26801746 |
T |
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| Q |
101 |
agggtcaattaatctcttatatggctgccaataatgtgcattgcaagtgcctgtggcaagtgattaagtggtcatttgttaggccagctgcctgcataaa |
200 |
Q |
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| T |
26801747 |
agggtcaattaatctcttatatggctgccaataatgtgcattgcaagtgcctgtggcaagtgattaagtggtcatttgttaggccagctgcctgcataaa |
26801846 |
T |
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| Q |
201 |
tgaatgaaccactgttggaccaacatat |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
26801847 |
tgaatgaaccactgttggaccaacatat |
26801874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 18415504 - 18415590
Alignment:
| Q |
129 |
caataatgtgcattgcaagtgcctgtggcaagtgattaagtggtcatttgttaggccagctgcctgcataaatgaatgaaccactgt |
215 |
Q |
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| T |
18415504 |
caataatgtgcatttcaagtggctgtggcaagtgattaagtggtcattggtgagaccagctgcttgcataaacgaatgtaccactgt |
18415590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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