View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19651_high_3 (Length: 739)
Name: NF19651_high_3
Description: NF19651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19651_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 157 - 722
Target Start/End: Original strand, 24349857 - 24350384
Alignment:
| Q |
157 |
tatgctaggtttccatacaaaatccaccactaagtatctttgtggcactgacacctctgattaaagacgtctacagtgtctaacacaactgtttacgtcc |
256 |
Q |
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| T |
24349857 |
tatgctaggtttccatacaaaatccaccactaagtatctttgtggcactgacacctctgattaaagacgtctacagtgtctaacacatctgtttacgtcc |
24349956 |
T |
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| Q |
257 |
aactaattcattttctcaaattattatattggtgttgacgtgttaagtgtgtctggtgtctgtgttagtgcttcatagctaagtactgctcaatacgtaa |
356 |
Q |
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| T |
24349957 |
aactaattcattttctcatattattatattggtgttgacgtgtcaagtgtgtctggtgtctgtgttagtgcttcatagctaagtactgctcaatacgtaa |
24350056 |
T |
|
| Q |
357 |
gttcatcgcgaaattttatctagctcgccatattcagctcaattttctcaggaaacaaacaatgtaaaggtttatgatcctgaaaatcaaaaagcacttg |
456 |
Q |
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| T |
24350057 |
gttcatcgcgaaattttatctagctcgccatatttagctcaattttctcaggaaacaaacaatgtaaaggtttatgatcctgaaaatcaaaaagcacttg |
24350156 |
T |
|
| Q |
457 |
gaaaaattcaaattaactaatagtactattcaattaacttggaatgcctggagttcacaatttctagcacgaatttttctggagaaacaaacactgaata |
556 |
Q |
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| T |
24350157 |
gaaaaattcaaatta---------------------acttggaatgcctggagttcacaatttctagcacgaatttttctggagaaacaaacactgaata |
24350235 |
T |
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| Q |
557 |
tgataatggtttgcaaattgaaaatgcgcattgttgaacaaattcaagaattggtaaatagttttcacgaagcgatttttagggtttttgttcatcaaaa |
656 |
Q |
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| T |
24350236 |
tgataatggtttgcaaattgaaaatgcgcattgttgaacaaattcaagaattggta-----------------gatttttagggtttttgttcatcaaaa |
24350318 |
T |
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| Q |
657 |
tagacattgataaagaaaacgataatgataatgatgaaaagaagaaccttagatacggtaggaggt |
722 |
Q |
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| T |
24350319 |
tagacattgataaagaaaacgatgatgataatgatgaaaagaagaaccttagatacagtaggaggt |
24350384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 24349711 - 24349800
Alignment:
| Q |
11 |
cacagaaccagccaaataagcacatttggaactcgagacattcgaagctaacccatttccacttttcgttgtcaatccaattacctcctc |
100 |
Q |
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| T |
24349711 |
cacagaaccagccaaataagcacatttggaactcgagacattcgaagctaacccatttccacttttcgttgtcaatccaattacctcctc |
24349800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 261 - 302
Target Start/End: Original strand, 15921759 - 15921801
Alignment:
| Q |
261 |
aattcattttctcaaattatta-tattggtgttgacgtgttaa |
302 |
Q |
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| T |
15921759 |
aattcattttctcaaattattattattgatgttgacgtgttaa |
15921801 |
T |
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