View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19651_high_5 (Length: 536)

Name: NF19651_high_5
Description: NF19651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19651_high_5
NF19651_high_5
[»] chr4 (27 HSPs)
chr4 (3-205)||(13215080-13215282)
chr4 (305-520)||(13214752-13214980)
chr4 (77-194)||(21660097-21660214)
chr4 (77-194)||(21668861-21668978)
chr4 (89-201)||(4185092-4185204)
chr4 (122-201)||(12798683-12798762)
chr4 (122-193)||(15729490-15729560)
chr4 (89-200)||(46545711-46545822)
chr4 (87-192)||(34075516-34075620)
chr4 (120-184)||(30938215-30938279)
chr4 (111-200)||(20608922-20609011)
chr4 (130-194)||(13901748-13901812)
chr4 (120-200)||(39509070-39509150)
chr4 (87-158)||(7949417-7949488)
chr4 (77-144)||(20041414-20041481)
chr4 (117-200)||(37109344-37109427)
chr4 (134-200)||(1730499-1730565)
chr4 (139-193)||(17816516-17816570)
chr4 (134-200)||(31759668-31759734)
chr4 (121-203)||(32003086-32003168)
chr4 (123-177)||(41346962-41347016)
chr4 (93-158)||(19112950-19113014)
chr4 (77-200)||(37443702-37443822)
chr4 (43-71)||(10359645-10359673)
chr4 (92-200)||(19238545-19238653)
chr4 (124-200)||(31826609-31826685)
chr4 (93-177)||(53496900-53496984)
[»] chr8 (17 HSPs)
chr8 (87-176)||(36205219-36205306)
chr8 (92-202)||(35641869-35641979)
chr8 (147-200)||(14254727-14254780)
chr8 (121-202)||(16852338-16852419)
chr8 (93-202)||(19703456-19703565)
chr8 (92-194)||(3624586-3624687)
chr8 (87-177)||(34966813-34966903)
chr8 (92-200)||(23361617-23361725)
chr8 (93-179)||(3305157-3305243)
chr8 (144-190)||(7286217-7286263)
chr8 (87-201)||(8484998-8485112)
chr8 (93-191)||(10287484-10287582)
chr8 (117-202)||(18897164-18897249)
chr8 (77-158)||(27750772-27750853)
chr8 (106-190)||(18546344-18546428)
chr8 (121-177)||(28783083-28783139)
chr8 (77-193)||(33727826-33727942)
[»] chr2 (17 HSPs)
chr2 (122-203)||(19322765-19322846)
chr2 (120-200)||(19016031-19016111)
chr2 (120-202)||(29503269-29503351)
chr2 (131-194)||(6760893-6760956)
chr2 (118-201)||(43963983-43964065)
chr2 (117-199)||(16918571-16918653)
chr2 (92-158)||(39715034-39715100)
chr2 (108-203)||(4060198-4060293)
chr2 (93-176)||(31573610-31573693)
chr2 (122-200)||(26545840-26545918)
chr2 (124-202)||(34041588-34041666)
chr2 (87-201)||(37480074-37480188)
chr2 (122-200)||(42327393-42327471)
chr2 (124-169)||(42860379-42860424)
chr2 (93-157)||(11251130-11251194)
chr2 (124-200)||(12994376-12994452)
chr2 (122-202)||(42602552-42602632)
[»] chr5 (12 HSPs)
chr5 (87-182)||(43442214-43442309)
chr5 (83-157)||(1279034-1279108)
chr5 (87-200)||(29075781-29075894)
chr5 (78-158)||(29210400-29210480)
chr5 (87-200)||(17028227-17028340)
chr5 (130-202)||(30883204-30883276)
chr5 (122-193)||(14495803-14495874)
chr5 (120-165)||(84859-84904)
chr5 (87-200)||(16773807-16773920)
chr5 (134-178)||(4793098-4793142)
chr5 (78-158)||(29173532-29173612)
chr5 (117-201)||(34984805-34984889)
[»] chr3 (14 HSPs)
chr3 (120-199)||(47454613-47454692)
chr3 (122-200)||(40063619-40063697)
chr3 (117-174)||(31608517-31608574)
chr3 (77-202)||(36720379-36720504)
chr3 (117-200)||(28703397-28703480)
chr3 (122-201)||(31520603-31520682)
chr3 (122-201)||(46518627-46518706)
chr3 (77-183)||(49494099-49494205)
chr3 (118-167)||(17108892-17108941)
chr3 (125-194)||(45308903-45308972)
chr3 (120-177)||(47236967-47237024)
chr3 (78-158)||(16212926-16213006)
chr3 (117-201)||(27093354-27093438)
chr3 (122-202)||(30311304-30311384)
[»] chr1 (24 HSPs)
chr1 (87-201)||(25297771-25297885)
chr1 (117-202)||(8904412-8904497)
chr1 (122-194)||(15786318-15786390)
chr1 (121-193)||(17410238-17410310)
chr1 (130-202)||(40257397-40257469)
chr1 (93-155)||(44370849-44370911)
chr1 (121-194)||(24730390-24730463)
chr1 (77-158)||(27476724-27476805)
chr1 (106-194)||(17745238-17745326)
chr1 (120-200)||(19528323-19528403)
chr1 (107-158)||(12370205-12370256)
chr1 (122-165)||(12587305-12587348)
chr1 (122-165)||(17439952-17439995)
chr1 (147-194)||(26232409-26232456)
chr1 (87-158)||(36124875-36124946)
chr1 (117-183)||(2799879-2799945)
chr1 (103-197)||(6948056-6948150)
chr1 (120-194)||(24047098-24047172)
chr1 (107-193)||(51703786-51703872)
chr1 (121-158)||(4825013-4825050)
chr1 (117-194)||(33700766-33700843)
chr1 (122-194)||(9224781-9224853)
chr1 (93-201)||(25494038-25494146)
chr1 (87-183)||(52336737-52336833)
[»] chr6 (10 HSPs)
chr6 (77-158)||(28841456-28841537)
chr6 (123-200)||(30127400-30127477)
chr6 (102-194)||(6776585-6776677)
chr6 (122-177)||(13227156-13227211)
chr6 (87-182)||(28363955-28364050)
chr6 (122-201)||(33549103-33549182)
chr6 (122-201)||(12188301-12188380)
chr6 (127-202)||(31622994-31623069)
chr6 (77-183)||(3715469-3715575)
chr6 (122-179)||(34786452-34786509)
[»] chr7 (22 HSPs)
chr7 (77-174)||(5934147-5934244)
chr7 (122-202)||(13106780-13106859)
chr7 (87-177)||(7721392-7721482)
chr7 (122-200)||(18363696-18363774)
chr7 (135-200)||(25590611-25590676)
chr7 (122-202)||(17041010-17041090)
chr7 (77-177)||(48771961-48772061)
chr7 (87-158)||(15137595-15137666)
chr7 (93-200)||(20335800-20335907)
chr7 (117-200)||(26459403-26459486)
chr7 (122-201)||(43215183-43215262)
chr7 (108-190)||(2962469-2962551)
chr7 (92-158)||(42712000-42712066)
chr7 (87-200)||(3280449-3280561)
chr7 (119-176)||(7499919-7499976)
chr7 (123-200)||(39499718-39499795)
chr7 (77-141)||(4566382-4566445)
chr7 (122-158)||(7309398-7309434)
chr7 (120-200)||(22760863-22760943)
chr7 (122-158)||(23301600-23301636)
chr7 (108-200)||(33869429-33869521)
chr7 (125-193)||(45709709-45709777)
[»] scaffold0118 (1 HSPs)
scaffold0118 (92-200)||(41601-41709)
[»] scaffold0258 (1 HSPs)
scaffold0258 (122-200)||(15321-15399)
[»] scaffold0299 (1 HSPs)
scaffold0299 (117-177)||(11551-11611)
[»] scaffold0194 (1 HSPs)
scaffold0194 (122-177)||(13044-13099)
[»] scaffold0032 (1 HSPs)
scaffold0032 (77-200)||(112282-112407)
[»] scaffold0291 (1 HSPs)
scaffold0291 (120-177)||(2466-2523)
[»] scaffold0021 (1 HSPs)
scaffold0021 (137-177)||(157000-157040)


Alignment Details
Target: chr4 (Bit Score: 179; Significance: 2e-96; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 3 - 205
Target Start/End: Complemental strand, 13215282 - 13215080
Alignment:
Q  3 gatgtcgaagaatatagcaccagactcagacgacgggataacgaagaaaaaacctagatatatgttaaagtcgctttttcttttagaaactaaattagtc 102  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  13215282 gatgacgaacaatatagcaccagactcagacgacgggataacgaagaaaaaacctagatatatgttaaagtcactttttcttttagaaactaaattagtc 13215183  T
Q  103 catctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggttta 202  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13215182 catctaaattgaagccagggagaatcaaacttgagacctcgaagagaagcacactcacagatctcaaaccaatactactagatcaacccaagcaggttta 13215083  T
Q  203 cgt 205  Q
    |||    
T  13215082 cgt 13215080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 305 - 520
Target Start/End: Complemental strand, 13214980 - 13214752
Alignment:
Q  305 tgaaagaataggctcagtttattggagaaggagaatctagagagagagaaaaatgataaaacactccttttcaagtttgtatatttgttgattcattatt 404  Q
    |||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13214980 tgaaagaataggatcagtttattggagg-ggagaatctagagagagagaaaaatgataaaacactctttttcaagtttgtatatttgttgattcattatt 13214882  T
Q  405 a---------------aaagaaacatannnnnnngtgttgcaattgcatgtcacaagtagttttattctaagggtttgtctaacatgttccacatgttaa 489  Q
    |               |||||||||||       |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  13214881 agttgattcattattaaaagaaacatatttttttgtgttgcaattgcatgtcacaagtagttttattctaagggtt-gtctaacatgttgcacatgttaa 13214783  T
Q  490 aacaagagaaatgatatatttggcaacattt 520  Q
    |||||||||||||||||||||| ||||||||    
T  13214782 aacaagagaaatgatatatttgacaacattt 13214752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 77 - 194
Target Start/End: Original strand, 21660097 - 21660214
Alignment:
Q  77 tttttcttttagaaactaaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaata 176  Q
    ||||| ||| |||| ||||||||||| | |||||||||  | || || |||| ||||||||||||||| || |||||||||| ||||||||||  |||||    
T  21660097 tttttttttaagaagctaaattagtctacctaaattgacactagagataatcgaacttgagacctcgaggaagagcacactcccagatctcaagtcaata 21660196  T
Q  177 ctactagatcaacccaag 194  Q
    | || ||| |||||||||    
T  21660197 ccaccagaccaacccaag 21660214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 77 - 194
Target Start/End: Original strand, 21668861 - 21668978
Alignment:
Q  77 tttttcttttagaaactaaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaata 176  Q
    ||||| ||| |||| ||||||||||| | |||||||||  | || || |||| ||||||||||||||| || |||||||||| ||||||||||  |||||    
T  21668861 tttttttttaagaagctaaattagtctacctaaattgacactagagataatcgaacttgagacctcgaggaagagcacactcccagatctcaagtcaata 21668960  T
Q  177 ctactagatcaacccaag 194  Q
    | || ||| |||||||||    
T  21668961 ccaccagaccaacccaag 21668978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 89 - 201
Target Start/End: Complemental strand, 4185204 - 4185092
Alignment:
Q  89 aaactaaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaa 188  Q
    |||||||||||| ||| |||||||||  | |||||||||| | ||||||||||||| ||||| |||||||  |  || ||||||||||| || |||||||    
T  4185204 aaactaaattagcccacctaaattgacactagggagaatcgatcttgagacctcgaggaggatcacactcttaagtcccaaaccaataccaccagatcaa 4185105  T
Q  189 cccaagcgggttt 201  Q
    || ||| ||||||    
T  4185104 ccaaagtgggttt 4185092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 122 - 201
Target Start/End: Complemental strand, 12798762 - 12798683
Alignment:
Q  122 gagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggttt 201  Q
    ||||||| ||| ||| ||||||| ||| ||||||||| |||||||||||||||||| ||| | |||||||||| ||||||    
T  12798762 gagaatcgaacctgaaacctcgaggagcagcacactcccagatctcaaaccaataccactcggtcaacccaagtgggttt 12798683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 122 - 193
Target Start/End: Complemental strand, 15729560 - 15729490
Alignment:
Q  122 gagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaa 193  Q
    ||||||| |||||||||| |||| ||||||||||||| || ||||||||||||||| |||| ||||||||||    
T  15729560 gagaatcgaacttgagacatcgaggaggagcacactctca-atctcaaaccaataccactaaatcaacccaa 15729490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 200
Target Start/End: Complemental strand, 46545822 - 46545711
Alignment:
Q  89 aaactaaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaa 188  Q
    ||||||||||||||||||||||||||   ||| || |||| ||  ||||| || || ||||||||||||| ||| |||||| ||||||| |||||  |||    
T  46545822 aaactaaattagtccatctaaattgacatcagagaaaatcgaatctgagatcttgaggaggagcacactctcaggtctcaagccaataccactaggccaa 46545723  T
Q  189 cccaagcgggtt 200  Q
    |||||| |||||    
T  46545722 cccaagtgggtt 46545711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 87 - 192
Target Start/End: Complemental strand, 34075620 - 34075516
Alignment:
Q  87 agaaactaaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatc 186  Q
    |||| |||||||||||||||||||||| | | || ||||||| ||| |||||||| ||  ||||| ||| ||| ||||||||||||||||| || ||| |    
T  34075620 agaagctaaattagtccatctaaattggtac-agagagaatctaacctgagaccttgagaaggagtacattcatagatctcaaaccaataccaccagacc 34075522  T
Q  187 aaccca 192  Q
    ||||||    
T  34075521 aaccca 34075516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 30938215 - 30938279
Alignment:
Q  120 gggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactaga 184  Q
    ||||||||| ||| ||||||||||| |||||||||||||  ||||| ||||||||||| ||||||    
T  30938215 gggagaatcgaacctgagacctcgaggaggagcacactccaagatcccaaaccaataccactaga 30938279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 111 - 200
Target Start/End: Complemental strand, 20609011 - 20608922
Alignment:
Q  111 ttgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggtt 200  Q
    ||||| || ||||||||| |||||||||||| || ||| | ||||||| | |||||||| ||||||| |  ||||||||||||| |||||    
T  20609011 ttgatacctgggagaatcgaacttgagaccttgatgagaaacacactcccggatctcaagccaataccatcagatcaacccaagtgggtt 20608922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 13901812 - 13901748
Alignment:
Q  130 aacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaag 194  Q
    ||||||||||||| | ||||| ||||||| ||| |||||| ||||||| |||||| |||||||||    
T  13901812 aacttgagacctcaaggaggaacacactcccaggtctcaagccaataccactagaccaacccaag 13901748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 120 - 200
Target Start/End: Complemental strand, 39509150 - 39509070
Alignment:
Q  120 gggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggtt 200  Q
    ||||||||| ||| ||||||||||| ||||||||||||| |||||| ||| ||| ||| |  ||| ||||||||| |||||    
T  39509150 gggagaatcgaacctgagacctcgaggaggagcacactcccagatcccaagccattaccatgagaccaacccaagtgggtt 39509070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 158
Target Start/End: Original strand, 7949417 - 7949488
Alignment:
Q  87 agaaactaaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactc 158  Q
    |||| ||||||||| ||| |||||||||  |||| ||||||| ||| |||||||| || |||||||||||||    
T  7949417 agaagctaaattagcccacctaaattgacaccagagagaatcgaacctgagaccttgaggaggagcacactc 7949488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 144
Target Start/End: Original strand, 20041414 - 20041481
Alignment:
Q  77 tttttcttttagaaactaaattagtccatctaaattgatgccagggagaatcaaacttgagacctcga 144  Q
    ||||||||  ||||||||||||||  |||| |||||||  |||||| ||||||||| |||||||||||    
T  20041414 tttttcttcaagaaactaaattagcacatccaaattgacaccagggtgaatcaaacctgagacctcga 20041481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 200
Target Start/End: Original strand, 37109344 - 37109427
Alignment:
Q  117 ccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggtt 200  Q
    |||| ||||||| ||| |||||||| || ||||||||||||| ||| || ||| ||||||| |||||  ||||||||| |||||    
T  37109344 ccagagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 37109427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 200
Target Start/End: Original strand, 1730499 - 1730565
Alignment:
Q  134 tgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggtt 200  Q
    |||||| | |||||||||||||||| ||| || ||| ||||||| ||||| |||||||||| |||||    
T  1730499 tgagactttgaagaggagcacactctcaggtcccaagccaataccactaggtcaacccaagtgggtt 1730565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 139 - 193
Target Start/End: Complemental strand, 17816570 - 17816516
Alignment:
Q  139 cctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaa 193  Q
    |||||||||| ||||||||  |||||| ||||||||||| |||||| ||||||||    
T  17816570 cctcgaagagtagcacacttccagatcccaaaccaataccactagaccaacccaa 17816516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 200
Target Start/End: Original strand, 31759668 - 31759734
Alignment:
Q  134 tgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggtt 200  Q
    |||||||| || ||||||||||||| ||  || ||| ||||||| |||||||||||||||| |||||    
T  31759668 tgagaccttgaggaggagcacactcccaagtcccaagccaataccactagatcaacccaagtgggtt 31759734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 121 - 203
Target Start/End: Complemental strand, 32003168 - 32003086
Alignment:
Q  121 ggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggtttac 203  Q
    ||||||| |||  |||||||| ||||| |||||||||  |||||||||||||||||| || |  ||||| |||| ||||||||    
T  32003168 ggagaattaaatctgagaccttgaagatgagcacactttcagatctcaaaccaataccaccaagtcaactcaagtgggtttac 32003086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 123 - 177
Target Start/End: Original strand, 41346962 - 41347016
Alignment:
Q  123 agaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatac 177  Q
    |||||| ||| |||||| |||| |||||||| |||| ||||||||||||||||||    
T  41346962 agaatcgaacctgagacttcgaggaggagcatactcccagatctcaaaccaatac 41347016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 19113014 - 19112950
Alignment:
Q  93 taaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactc 158  Q
    |||||||||||| |||||||| | || ||||||||| ||| ||| | |||||||||||||||||||    
T  19113014 taaattagtccacctaaattggtacc-gggagaatcgaacctgataactcgaagaggagcacactc 19112950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 200
Target Start/End: Complemental strand, 37443822 - 37443702
Alignment:
Q  77 tttttcttttagaaactaaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaata 176  Q
    ||||| ||| |||||||||||||| |||  |||||||   |||| || |||| ||| ||| |||||   |||||| |||||| |||||| ||| ||||||    
T  37443822 tttttgtttaagaaactaaattagcccacataaattggcaccagagataatcgaacatgaaacctc---gaggagtacactcccagatcccaagccaata 37443726  T
Q  177 ctactagatcaacccaagcgggtt 200  Q
    | ||||| |||||||||| |||||    
T  37443725 ccactaggtcaacccaagtgggtt 37443702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 71
Target Start/End: Original strand, 10359645 - 10359673
Alignment:
Q  43 acgaagaaaaaacctagatatatgttaaa 71  Q
    |||||||||||||||||||||||||||||    
T  10359645 acgaagaaaaaacctagatatatgttaaa 10359673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 92 - 200
Target Start/End: Original strand, 19238545 - 19238653
Alignment:
Q  92 ctaaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaaccc 191  Q
    ||||||||| ||| | |||||| | || ||||||||| |||  |||||||||| ||||||||||||| ||  || ||| ||||||| || ||  ||||||    
T  19238545 ctaaattagcccacccaaattggtaccggggagaatcgaacccgagacctcgaggaggagcacactcccaagtcccaagccaataccaccaggccaaccc 19238644  T
Q  192 aagcgggtt 200  Q
    ||| |||||    
T  19238645 aagtgggtt 19238653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 200
Target Start/End: Complemental strand, 31826685 - 31826609
Alignment:
Q  124 gaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggtt 200  Q
    ||||| |||||||||||| || ||||||||||||| || ||| ||| || |||| |||||  ||||||||| |||||    
T  31826685 gaatcgaacttgagaccttgaggaggagcacactcgcaaatcccaagcctataccactagggcaacccaagtgggtt 31826609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 177
Target Start/End: Complemental strand, 53496984 - 53496900
Alignment:
Q  93 taaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatac 177  Q
    |||||||||||| | ||||||   |||| ||||||||||  |||||| | || ||||||||||||| ||| || |||||||||||    
T  53496984 taaattagtccaaccaaattggctccagagagaatcaaatctgagactttgaggaggagcacactcccaggtcccaaaccaatac 53496900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 6e-20; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 87 - 176
Target Start/End: Complemental strand, 36205306 - 36205219
Alignment:
Q  87 agaaactaaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaata 176  Q
    |||| |||||||||||||||||||||||  || ||||||||| ||| |||||||| || ||||||||||||| |||||||||||||||||    
T  36205306 agaagctaaattagtccatctaaattga--ccggggagaatcgaacatgagaccttgaggaggagcacactcccagatctcaaaccaata 36205219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 92 - 202
Target Start/End: Original strand, 35641869 - 35641979
Alignment:
Q  92 ctaaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaaccc 191  Q
    ||||||||| |||||||||||| | |  | ||||||| ||| |||||| |||| ||||||||||||| || ||||||| || |||| || ||| ||||||    
T  35641869 ctaaattagcccatctaaattggttctggagagaatcgaacctgagacatcgaggaggagcacactcccaaatctcaagccgataccaccagaccaaccc 35641968  T
Q  192 aagcgggttta 202  Q
    ||| |||||||    
T  35641969 aagtgggttta 35641979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 14254780 - 14254727
Alignment:
Q  147 aggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggtt 200  Q
    |||||||||||| |||||||||||||||||| ||||| |||||||||| |||||    
T  14254780 aggagcacactcccagatctcaaaccaatacaactaggtcaacccaagtgggtt 14254727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 121 - 202
Target Start/End: Complemental strand, 16852419 - 16852338
Alignment:
Q  121 ggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggttta 202  Q
    |||||||| ||| ||||||||||| ||||||||||||| ||| || ||| ||||||| |||||  ||||||||| |||||||    
T  16852419 ggagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggttta 16852338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 93 - 202
Target Start/End: Original strand, 19703456 - 19703565
Alignment:
Q  93 taaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaaccca 192  Q
    |||||||| ||| || ||||||  | |||||||||| ||| |||||||| || ||||||||||||| ||| || ||| ||||||| |||||  |||||||    
T  19703456 taaattagcccaccttaattgacactagggagaatcgaacctgagaccttgaggaggagcacactctcaggtcccaagccaataccactaggccaaccca 19703555  T
Q  193 agcgggttta 202  Q
    || |||||||    
T  19703556 agtgggttta 19703565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 194
Target Start/End: Complemental strand, 3624687 - 3624586
Alignment:
Q  92 ctaaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaaccc 191  Q
    ||||||||| ||| |||||||||  || | ||||||| ||| |||||||| |||||||||||||||| ||| || ||| ||||||| |||||  ||||||    
T  3624687 ctaaattagcccacctaaattgac-ccggagagaatcgaacctgagaccttgaagaggagcacactcccaggtcccaagccaataccactaggccaaccc 3624589  T
Q  192 aag 194  Q
    |||    
T  3624588 aag 3624586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 177
Target Start/End: Original strand, 34966813 - 34966903
Alignment:
Q  87 agaaactaaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatac 177  Q
    |||| ||||||||| ||| ||||| ||   || |||| |||||||||||||||||||||||| ||||||||| ||  |||||| |||||||    
T  34966813 agaagctaaattagcccacctaaaatgccaccggggataatcaaacttgagacctcgaagagtagcacactcccaagtctcaagccaatac 34966903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 92 - 200
Target Start/End: Original strand, 23361617 - 23361725
Alignment:
Q  92 ctaaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaaccc 191  Q
    ||||||||| ||| |||||||||  |||| ||||||  ||| |||||||| || ||||||||||||| || ||| |||  |||||| || || |||||||    
T  23361617 ctaaattagcccacctaaattgacaccagagagaattgaacctgagaccttgaggaggagcacactcccatatcccaagtcaataccaccaggtcaaccc 23361716  T
Q  192 aagcgggtt 200  Q
    ||| |||||    
T  23361717 aagtgggtt 23361725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 93 - 179
Target Start/End: Original strand, 3305157 - 3305243
Alignment:
Q  93 taaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatacta 179  Q
    |||||||| ||| ||||||||   |||| || |||| || ||||||||| || ||||||||| ||| |||||| |||||||||||||    
T  3305157 taaattagcccacctaaattggcaccagagataatcgaatttgagaccttgaggaggagcacgctcccagatcccaaaccaatacta 3305243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 144 - 190
Target Start/End: Complemental strand, 7286263 - 7286217
Alignment:
Q  144 aagaggagcacactcacagatctcaaaccaatactactagatcaacc 190  Q
    ||||||||||||||| |||||| ||||||||||| ||||| ||||||    
T  7286263 aagaggagcacactcccagatcccaaaccaataccactaggtcaacc 7286217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 201
Target Start/End: Complemental strand, 8485112 - 8484998
Alignment:
Q  87 agaaactaaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatc 186  Q
    |||| ||||||||| ||| ||||||||   || | ||||||| ||  ||||||||| ||||||||||||||||||| || ||| | ||||| || ||  |    
T  8485112 agaagctaaattagcccacctaaattggcaccggagagaatcgaaaatgagacctcaaagaggagcacactcacaggtcccaagcaaataccaccaggcc 8485013  T
Q  187 aacccaagcgggttt 201  Q
    |||||||| ||||||    
T  8485012 aacccaagtgggttt 8484998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 93 - 191
Target Start/End: Complemental strand, 10287582 - 10287484
Alignment:
Q  93 taaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaaccc 191  Q
    |||||||| ||| ||||||||||   | |||||||  ||| ||||||||||| ||| ||||||||  ||||| |||| |||||||||| ||| ||||||    
T  10287582 taaattagcccacctaaattgatataaaggagaattgaacctgagacctcgaggagaagcacacttccagatttcaagccaatactaccagaccaaccc 10287484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 202
Target Start/End: Complemental strand, 18897249 - 18897164
Alignment:
Q  117 ccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggttta 202  Q
    ||||| |||||| ||| |||||||| || |||||||||||||  || || |||||||| || |||||  ||||||||| |||||||    
T  18897249 ccaggaagaatcgaacatgagaccttgaggaggagcacactctaaggtcccaaaccaacaccactaggccaacccaagtgggttta 18897164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 158
Target Start/End: Complemental strand, 27750853 - 27750772
Alignment:
Q  77 tttttcttttagaaactaaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactc 158  Q
    ||||| ||| |||| ||||||||||||||| |||||||  | || | ||||| ||| |||||||| || |||||||||||||    
T  27750853 tttttttttaagaagctaaattagtccatccaaattgacactagagggaatcgaacctgagaccttgaggaggagcacactc 27750772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 106 - 190
Target Start/End: Original strand, 18546344 - 18546428
Alignment:
Q  106 ctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacc 190  Q
    ||||||||| ||| | ||||||| ||| ||||||||||| ||||||||  ||| ||| || |||| |||||| |||||| |||||    
T  18546344 ctaaattgacgccggtgagaatcgaacctgagacctcgaggaggagcatgctctcaggtcccaaatcaataccactagaccaacc 18546428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 28783139 - 28783083
Alignment:
Q  121 ggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatac 177  Q
    |||||||| ||| |||||||| || ||||||||||||| ||| |||||| |||||||    
T  28783139 ggagaatcgaacatgagaccttgaggaggagcacactcccaggtctcaagccaatac 28783083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 193
Target Start/End: Original strand, 33727826 - 33727942
Alignment:
Q  77 tttttcttttagaaactaaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaata 176  Q
    ||||| ||| |||| ||||||||| ||||| |||||||  | || | ||||| ||| |||||||| || ||||||||||||  ||  ||||||||| |||    
T  33727826 tttttttttaagaagctaaattagcccatccaaattgacactagagggaatcgaacctgagaccttgaggaggagcacacttccaagtctcaaacctata 33727925  T
Q  177 ctactagatcaacccaa 193  Q
    | |||||  ||||||||    
T  33727926 ccactagggcaacccaa 33727942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 122 - 203
Target Start/End: Complemental strand, 19322846 - 19322765
Alignment:
Q  122 gagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggtttac 203  Q
    |||||||||||  ||||||| |||||||||||||||| ||| || ||||||||||| |||||||||||||||| ||||||||    
T  19322846 gagaatcaaaccagagaccttgaagaggagcacactcccaggtcccaaaccaataccactagatcaacccaagtgggtttac 19322765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 120 - 200
Target Start/End: Complemental strand, 19016111 - 19016031
Alignment:
Q  120 gggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggtt 200  Q
    ||||||||||||||||||||||||| ||||||||||||| ||  |||||| ||||||| |  ||| ||||||||| |||||    
T  19016111 gggagaatcaaacttgagacctcgaggaggagcacactcccaagtctcaagccaataccatcagaccaacccaagtgggtt 19016031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 120 - 202
Target Start/End: Complemental strand, 29503351 - 29503269
Alignment:
Q  120 gggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggttta 202  Q
    ||||||||| ||| |||||||| || ||||||||||||| ||| || ||||||||||| |||||  ||||||||| |||||||    
T  29503351 gggagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaaaccaataccactaggccaacccaagtgggttta 29503269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 131 - 194
Target Start/End: Complemental strand, 6760956 - 6760893
Alignment:
Q  131 acttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaag 194  Q
    |||||||| ||||| |||||||| |||| |||||| |||||||||||||| ||| |||||||||    
T  6760956 acttgagatctcgatgaggagcatactcccagatcccaaaccaatactaccagaccaacccaag 6760893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 118 - 201
Target Start/End: Original strand, 43963983 - 43964065
Alignment:
Q  118 cagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggttt 201  Q
    ||||| ||||||||| |||||||| || |||||||||||||  || || |||||||| ||||||||| ||||||||| ||||||    
T  43963983 cagggggaatcaaacatgagaccttga-gaggagcacactccaaggtcccaaaccaacactactagaccaacccaagtgggttt 43964065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 199
Target Start/End: Original strand, 16918571 - 16918653
Alignment:
Q  117 ccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggt 199  Q
    |||| ||||||| ||| | |||||| || ||||||||||||| |||||| ||||||||||| |||||  ||||||||| ||||    
T  16918571 ccagagagaatccaacctaagaccttgaggaggagcacactcccagatcccaaaccaataccactaggccaacccaagtgggt 16918653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 158
Target Start/End: Complemental strand, 39715100 - 39715034
Alignment:
Q  92 ctaaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactc 158  Q
    ||||||||| ||| |||||||| |||  ||||||||| ||| ||||||||||| |||||||||||||    
T  39715100 ctaaattagcccacctaaattggtgctggggagaatcgaacctgagacctcgaggaggagcacactc 39715034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 203
Target Start/End: Original strand, 4060198 - 4060293
Alignment:
Q  108 aaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggtttac 203  Q
    |||||||  |||| ||||||| ||| ||||| || || ||| ||||||||| ||| | |||||||||||| |||||  ||||||||| ||||||||    
T  4060198 aaattgacaccagagagaatcgaacctgagatcttgaggagaagcacactctcaggtttcaaaccaataccactaggccaacccaagtgggtttac 4060293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 176
Target Start/End: Original strand, 31573610 - 31573693
Alignment:
Q  93 taaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaata 176  Q
    |||||||||||| |||||||||   |   ||||||| ||| |||||| || | ||||||||||||| |||||||||||||||||    
T  31573610 taaattagtccacctaaattgacatcgaagagaatcgaacctgagacatcaaggaggagcacactctcagatctcaaaccaata 31573693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 122 - 200
Target Start/End: Complemental strand, 26545918 - 26545840
Alignment:
Q  122 gagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggtt 200  Q
    |||||||||||||||||||||||  |||||||||||  |||||| ||| | ||||| || | | ||||||||| |||||    
T  26545918 gagaatcaaacttgagacctcgagaaggagcacacttccagatcccaagctaataccaccaaaccaacccaagtgggtt 26545840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 124 - 202
Target Start/End: Original strand, 34041588 - 34041666
Alignment:
Q  124 gaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggttta 202  Q
    ||||||||| |||||||| || ||||||||||||| ||||||  ||  |||||| |||||  ||||||||| |||||||    
T  34041588 gaatcaaacctgagaccttgaggaggagcacactctcagatcctaagtcaataccactaggccaacccaagtgggttta 34041666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 201
Target Start/End: Complemental strand, 37480188 - 37480074
Alignment:
Q  87 agaaactaaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatc 186  Q
    |||| ||||||||| ||| | ||||||   || ||||||||| ||| |||||||| || ||||||||||||| ||| || ||| ||||||| || ||  |    
T  37480188 agaagctaaattagcccacccaaattgggaccggggagaatcgaacctgagaccttgaggaggagcacactctcaggtcccaagccaataccaccaggcc 37480089  T
Q  187 aacccaagcgggttt 201  Q
    |||||||| ||||||    
T  37480088 aacccaagtgggttt 37480074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 42327393 - 42327471
Alignment:
Q  122 gagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggtt 200  Q
    ||||||| ||| |||||||| || ||||||||||||| ||| || ||| ||||||| |||||  ||||||||| |||||    
T  42327393 gagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 42327471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 42860424 - 42860379
Alignment:
Q  124 gaatcaaacttgagacctcgaagaggagcacactcacagatctcaa 169  Q
    ||||| ||||||||||||||| ||||||||||||| ||| ||||||    
T  42860424 gaatcgaacttgagacctcgaggaggagcacactcccaggtctcaa 42860379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 11251194 - 11251130
Alignment:
Q  93 taaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacact 157  Q
    ||||||||  || |||||||||  |||| ||||||||||| |||||||| || ||||||||||||    
T  11251194 taaattagcacacctaaattgacaccagagagaatcaaacctgagaccttgaggaggagcacact 11251130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 200
Target Start/End: Original strand, 12994376 - 12994452
Alignment:
Q  124 gaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggtt 200  Q
    ||||| ||||||||||||  | ||||||||||||| ||| || |||  |||||| |||||| |||| ||||||||||    
T  12994376 gaatcgaacttgagaccttaaggaggagcacactcccaggtcccaagtcaataccactagaccaactcaagcgggtt 12994452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 122 - 202
Target Start/End: Complemental strand, 42602632 - 42602552
Alignment:
Q  122 gagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggttta 202  Q
    ||||||||||| | |||||| ||  |||||||||||| ||| || ||| ||||||| |||||  ||||||||| |||||||    
T  42602632 gagaatcaaacctaagaccttgagaaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggttta 42602552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 87 - 182
Target Start/End: Complemental strand, 43442309 - 43442214
Alignment:
Q  87 agaaactaaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactacta 182  Q
    |||||||||||||| ||||| |||||||   ||| ||||||| ||| |||||||| || ||||||||||||| |||||||||||||||||| ||||    
T  43442309 agaaactaaattagcccatccaaattgacaacagagagaatcgaacctgagaccttgaggaggagcacactcccagatctcaaaccaataccacta 43442214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 1279108 - 1279034
Alignment:
Q  83 ttttagaaactaaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacact 157  Q
    |||||||| ||||||||||||| | |||||||  |||| ||||||| ||||||||||||||| ||||||||||||    
T  1279108 ttttagaagctaaattagtccacccaaattgacaccagagagaatctaacttgagacctcgatgaggagcacact 1279034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 87 - 200
Target Start/End: Complemental strand, 29075894 - 29075781
Alignment:
Q  87 agaaactaaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatc 186  Q
    |||| ||||||||| ||||||||||||   |||| ||||||| ||| ||||| ||||| ||||||||||||| |||||| ||| ||||||| |||||       
T  29075894 agaagctaaattagcccatctaaattggcaccagagagaatcgaacatgagatctcgaggaggagcacactcccagatcccaagccaataccactaggca 29075795  T
Q  187 aacccaagcgggtt 200  Q
    |||||||| |||||    
T  29075794 aacccaagtgggtt 29075781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 78 - 158
Target Start/End: Complemental strand, 29210480 - 29210400
Alignment:
Q  78 ttttcttttagaaactaaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactc 158  Q
    |||| ||| |||| ||||||||||||| |||||||||| |||| ||||||  ||||||| ||||||| |||||||||||||    
T  29210480 ttttttttaagaagctaaattagtccacctaaattgataccagagagaattgaacttgaaacctcgaggaggagcacactc 29210400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 87 - 200
Target Start/End: Original strand, 17028227 - 17028340
Alignment:
Q  87 agaaactaaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatc 186  Q
    |||| ||||||||| ||| |||||||||  | || | ||||||||| |||||||| || ||||||||||||| ||  || ||| ||||||| ||||| ||    
T  17028227 agaagctaaattagcccacctaaattgacactagagggaatcaaacctgagaccttgaggaggagcacactcccaagtcccaacccaatacaactaggtc 17028326  T
Q  187 aacccaagcgggtt 200  Q
    |||||||| |||||    
T  17028327 aacccaagtgggtt 17028340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 30883204 - 30883276
Alignment:
Q  130 aacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggttta 202  Q
    |||||||||||| || ||||||||||||| ||| || ||| ||||||| |||||| ||||||||| |||||||    
T  30883204 aacttgagaccttgaggaggagcacactcccaggtcccaagccaataccactagaccaacccaagtgggttta 30883276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 193
Target Start/End: Original strand, 14495803 - 14495874
Alignment:
Q  122 gagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaa 193  Q
    ||||||||||  ||||||||||| ||||||||||||| |||||| |||  |||||| || ||| ||||||||    
T  14495803 gagaatcaaatctgagacctcgaggaggagcacactcccagatcccaagtcaataccaccagaccaacccaa 14495874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 165
Target Start/End: Complemental strand, 84904 - 84859
Alignment:
Q  120 gggagaatcaaacttgagacctcgaagaggagcacactcacagatc 165  Q
    ||||||||| |||||||||||| || ||||||||||||| ||||||    
T  84904 gggagaatcgaacttgagaccttgaggaggagcacactcccagatc 84859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 200
Target Start/End: Complemental strand, 16773920 - 16773807
Alignment:
Q  87 agaaactaaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatc 186  Q
    |||| ||||||||| ||| ||||||||    ||| ||||||| ||| ||||||||||| ||||||||||||| ||| || |||  |||||| || ||| |    
T  16773920 agaagctaaattagcccacctaaattggcatcagagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagtcaataccaccagacc 16773821  T
Q  187 aacccaagcgggtt 200  Q
    ||| |||| |||||    
T  16773820 aactcaagtgggtt 16773807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 4793098 - 4793142
Alignment:
Q  134 tgagacctcgaagaggagcacactcacagatctcaaaccaatact 178  Q
    ||||||||||| ||||||||||||| ||| || ||||||||||||    
T  4793098 tgagacctcgaggaggagcacactcccaggtcccaaaccaatact 4793142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 158
Target Start/End: Complemental strand, 29173612 - 29173532
Alignment:
Q  78 ttttcttttagaaactaaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactc 158  Q
    |||| ||| |||| ||||||||| ||| |||||||||  |||| || |||| ||| ||| ||||||| |||||||||||||    
T  29173612 ttttttttaagaagctaaattagcccacctaaattgacaccagagataatcgaacctgaaacctcgaggaggagcacactc 29173532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 117 - 201
Target Start/End: Complemental strand, 34984889 - 34984805
Alignment:
Q  117 ccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggttt 201  Q
    |||| ||||||| ||| | |||||| || ||||||||||||| ||| |  ||| ||||||| |||||| ||||||||| ||||||    
T  34984889 ccagagagaatcgaacctaagaccttgaggaggagcacactcccaggttccaagccaataccactagaccaacccaagtgggttt 34984805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 120 - 199
Target Start/End: Original strand, 47454613 - 47454692
Alignment:
Q  120 gggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggt 199  Q
    ||||||||| ||| ||||||||||| |||||||||||||  ||||||||| ||||||| |||||| ||||||||| ||||    
T  47454613 gggagaatcgaacctgagacctcgaggaggagcacactccaagatctcaagccaataccactagaacaacccaagtgggt 47454692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 200
Target Start/End: Complemental strand, 40063697 - 40063619
Alignment:
Q  122 gagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggtt 200  Q
    ||||||| ||||||||||||  | |||||||| |||| |||||| ||| ||||||||||||  |||||||||| |||||    
T  40063697 gagaatcgaacttgagaccttaaggaggagcatactctcagatcccaagccaatactactaagtcaacccaagtgggtt 40063619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 31608517 - 31608574
Alignment:
Q  117 ccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaa 174  Q
    |||| ||||||||||  ||||||||||| ||||||||||||| |||||||||| ||||    
T  31608517 ccagagagaatcaaatctgagacctcgaggaggagcacactcccagatctcaagccaa 31608574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 77 - 202
Target Start/End: Complemental strand, 36720504 - 36720379
Alignment:
Q  77 tttttcttttagaaactaaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaata 176  Q
    ||||| ||| |||| |||||  || ||| |||||||||  | || ||||||| ||| ||| ||||||| ||||||||||||| || ||| ||| ||||||    
T  36720504 tttttttttaagaagctaaaccagcccacctaaattgacactagagagaatcgaacctgaaacctcgaggaggagcacactcccatatcccaagccaata 36720405  T
Q  177 ctactagatcaacccaagcgggttta 202  Q
    | || ||| ||||||||| |||||||    
T  36720404 ccaccagaccaacccaagtgggttta 36720379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 200
Target Start/End: Original strand, 28703397 - 28703480
Alignment:
Q  117 ccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggtt 200  Q
    |||| ||||||| ||| |||||||| |||||||||||||||| |||||| ||| | ||||  ||| || ||||||||| |||||    
T  28703397 ccagagagaatcgaacctgagaccttgaagaggagcacactcccagatcccaagctaatatcactggaccaacccaagtgggtt 28703480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 201
Target Start/End: Original strand, 31520603 - 31520682
Alignment:
Q  122 gagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggttt 201  Q
    ||||||||||| | ||||||||| ||||||||||||| |||||| ||| ||||| | || ||  ||||||||| ||||||    
T  31520603 gagaatcaaacctaagacctcgaggaggagcacactcccagatcccaagccaatgccaccaggccaacccaagtgggttt 31520682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 201
Target Start/End: Complemental strand, 46518706 - 46518627
Alignment:
Q  122 gagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggttt 201  Q
    ||||||||||| ||| |||| || ||||||||||||| |||||| ||| ||||||| ||||   ||||||||| ||||||    
T  46518706 gagaatcaaacctgaaaccttgaggaggagcacactcccagatcccaagccaataccactatgccaacccaagtgggttt 46518627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 77 - 183
Target Start/End: Original strand, 49494099 - 49494205
Alignment:
Q  77 tttttcttttagaaactaaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaata 176  Q
    ||||| ||| |||| |||||||| || ||||| ||||    ||||||||||||||| ||||||||||| || |||||||||| || || ||||  |||||    
T  49494099 tttttttttaagaagctaaattaatctatctagattggcatcagggagaatcaaacctgagacctcgaggaagagcacactcccaaatttcaagtcaata 49494198  T
Q  177 ctactag 183  Q
    | |||||    
T  49494199 ccactag 49494205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 167
Target Start/End: Original strand, 17108892 - 17108941
Alignment:
Q  118 cagggagaatcaaacttgagacctcgaagaggagcacactcacagatctc 167  Q
    ||||||||||||||| |||||||| || ||||||||||||| || |||||    
T  17108892 cagggagaatcaaacctgagaccttgaggaggagcacactcccacatctc 17108941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 194
Target Start/End: Original strand, 45308903 - 45308972
Alignment:
Q  125 aatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaag 194  Q
    |||| ||| ||||||||||| |||||||| |||||||  || ||||||||||| || ||| |||||||||    
T  45308903 aatcgaacctgagacctcgaggaggagcatactcacaagtcccaaaccaataccaccagaacaacccaag 45308972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 177
Target Start/End: Original strand, 47236967 - 47237024
Alignment:
Q  120 gggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatac 177  Q
    ||||||||| ||| |||||||| |||||||||||||||| | | || |||||||||||    
T  47236967 gggagaatcgaacatgagaccttgaagaggagcacactcccgggtcccaaaccaatac 47237024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 158
Target Start/End: Original strand, 16212926 - 16213006
Alignment:
Q  78 ttttcttttagaaactaaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactc 158  Q
    |||| ||| |||| ||||||||||||||| |||||||| || | | ||||  ||||||||||||  | |||||||||||||    
T  16212926 ttttttttaagaagctaaattagtccatccaaattgataccggagtgaattgaacttgagaccttaaggaggagcacactc 16213006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 117 - 201
Target Start/End: Original strand, 27093354 - 27093438
Alignment:
Q  117 ccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggttt 201  Q
    |||| ||||||||||| |||||||| || ||||||||||||| ||  |  ||| ||||||| |||||  ||||||||| ||||||    
T  27093354 ccagagagaatcaaacctgagaccttgaggaggagcacactcccaagttccaagccaataccactaggccaacccaagtgggttt 27093438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 122 - 202
Target Start/End: Complemental strand, 30311384 - 30311304
Alignment:
Q  122 gagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggttta 202  Q
    ||||||| ||| |||||||| || ||||||||||||| |||||| ||| || |||| |||||  ||||||| | |||||||    
T  30311384 gagaatcgaacctgagaccttgaggaggagcacactcccagatcccaagcctataccactaggccaacccaggtgggttta 30311304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 87 - 201
Target Start/End: Complemental strand, 25297885 - 25297771
Alignment:
Q  87 agaaactaaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatc 186  Q
    |||| ||||||||  ||| ||||||||| ||| | ||||||||||| | ||||||||| ||||||||||||| ||||||  ||  |||||| |||||| |    
T  25297885 agaagctaaattatcccacctaaattgacgccggtgagaatcaaacctcagacctcgaggaggagcacactctcagatcctaagtcaataccactagacc 25297786  T
Q  187 aacccaagcgggttt 201  Q
    |||||||| ||||||    
T  25297785 aacccaagtgggttt 25297771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 202
Target Start/End: Complemental strand, 8904497 - 8904412
Alignment:
Q  117 ccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggttta 202  Q
    |||| ||||||| |||||||||||| || |||||||||||||||| ||| |||  ||||||||||||  ||||||||| |||||||    
T  8904497 ccagagagaatcgaacttgagaccttgaggaggagcacactcacatatcccaagtcaatactactaggccaacccaagtgggttta 8904412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 122 - 194
Target Start/End: Original strand, 15786318 - 15786390
Alignment:
Q  122 gagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaag 194  Q
    ||||||| ||| |||||||| || ||||||||||||| |||||| ||| |||||||||||||| |||||||||    
T  15786318 gagaatcgaacctgagaccttgaggaggagcacactcccagatcccaagccaatactactagaccaacccaag 15786390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 121 - 193
Target Start/End: Complemental strand, 17410310 - 17410238
Alignment:
Q  121 ggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaa 193  Q
    |||||||| ||||||||| ||||| ||||| ||||||| |||||| ||||||||||| |||||  ||||||||    
T  17410310 ggagaatcgaacttgagatctcgaggaggaccacactcccagatcccaaaccaataccactaggccaacccaa 17410238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 202
Target Start/End: Complemental strand, 40257469 - 40257397
Alignment:
Q  130 aacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggttta 202  Q
    ||||||||||||||| ||||||||||||| ||| |||||| ||||||| || ||  ||||||||| |||||||    
T  40257469 aacttgagacctcgaggaggagcacactcccaggtctcaagccaataccaccaggccaacccaagtgggttta 40257397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 93 - 155
Target Start/End: Original strand, 44370849 - 44370911
Alignment:
Q  93 taaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcaca 155  Q
    ||||||||  || |||||||||  |||| |||||||||| |||||||||||||||||||||||    
T  44370849 taaattagctcacctaaattgaaaccagagagaatcaaagttgagacctcgaagaggagcaca 44370911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 121 - 194
Target Start/End: Complemental strand, 24730463 - 24730390
Alignment:
Q  121 ggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaag 194  Q
    |||| ||||||| || ||||| |||||||||||||||| ||||||||||  |||||| |||||  |||||||||    
T  24730463 ggaggatcaaacctgggaccttgaagaggagcacactcccagatctcaagacaataccactaggccaacccaag 24730390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 77 - 158
Target Start/End: Original strand, 27476724 - 27476805
Alignment:
Q  77 tttttcttttagaaactaaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactc 158  Q
    ||||| ||| |||| ||||||||| ||| |||||| |   |||| ||||||||||||||||| ||||| |||||||||||||    
T  27476724 tttttttttaagaagctaaattagcccacctaaatcggcaccagagagaatcaaacttgagatctcgaggaggagcacactc 27476805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 194
Target Start/End: Original strand, 17745238 - 17745326
Alignment:
Q  106 ctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaag 194  Q
    |||||||||  |||| ||||||| ||| ||||||||||| ||||||||||| | ||| || ||| ||||||| |||||  |||||||||    
T  17745238 ctaaattgacaccagagagaatcgaacatgagacctcgaggaggagcacacgctcaggtcccaagccaataccactaggccaacccaag 17745326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 120 - 200
Target Start/End: Original strand, 19528323 - 19528403
Alignment:
Q  120 gggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggtt 200  Q
    ||||||||| ||| |||||||| || |||||||||||||| ||||| ||| ||||||| || ||  ||||||||| |||||    
T  19528323 gggagaatcgaacctgagaccttgaggaggagcacactcatagatcccaagccaataccaccaggccaacccaagtgggtt 19528403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 158
Target Start/End: Complemental strand, 12370256 - 12370205
Alignment:
Q  107 taaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactc 158  Q
    ||||||||| || | ||||||||||| ||||||||||| |||||||||||||    
T  12370256 taaattgataccggagagaatcaaacatgagacctcgaggaggagcacactc 12370205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 165
Target Start/End: Complemental strand, 12587348 - 12587305
Alignment:
Q  122 gagaatcaaacttgagacctcgaagaggagcacactcacagatc 165  Q
    ||||||| ||| ||||||||||| ||||||||||||||||||||    
T  12587348 gagaatcgaacctgagacctcgaggaggagcacactcacagatc 12587305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 165
Target Start/End: Complemental strand, 17439995 - 17439952
Alignment:
Q  122 gagaatcaaacttgagacctcgaagaggagcacactcacagatc 165  Q
    ||||||||||| ||||||||||| ||||||||||||| ||||||    
T  17439995 gagaatcaaacatgagacctcgaggaggagcacactcccagatc 17439952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 194
Target Start/End: Original strand, 26232409 - 26232456
Alignment:
Q  147 aggagcacactcacagatctcaaaccaatactactagatcaacccaag 194  Q
    |||||||||||| |||||||||| ||||||| |||||| |||||||||    
T  26232409 aggagcacactcccagatctcaagccaataccactagaccaacccaag 26232456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 158
Target Start/End: Complemental strand, 36124946 - 36124875
Alignment:
Q  87 agaaactaaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactc 158  Q
    |||| ||||||||| ||| ||||||||  || ||| || ||||||||||||||||| | |||||||||||||    
T  36124946 agaagctaaattagcccacctaaattggcgctaggaaggatcaaacttgagacctcaaggaggagcacactc 36124875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 117 - 183
Target Start/End: Complemental strand, 2799945 - 2799879
Alignment:
Q  117 ccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactag 183  Q
    |||| ||||||| ||| |||||||| || ||||||||||||| |||||||||| || |||| |||||    
T  2799945 ccagagagaatcgaacctgagaccttgaggaggagcacactcccagatctcaagcctataccactag 2799879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 197
Target Start/End: Original strand, 6948056 - 6948150
Alignment:
Q  103 catctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgg 197  Q
    ||||||||||||  || | ||||||  ||| ||||||||||| ||| ||||||||| ||||| |||||| ||||| ||  || ||||||||||||    
T  6948056 catctaaattgacaccggtgagaattgaacatgagacctcgaggagcagcacactcccagatgtcaaactaataccacccgaccaacccaagcgg 6948150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 120 - 194
Target Start/End: Original strand, 24047098 - 24047172
Alignment:
Q  120 gggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaag 194  Q
    ||||||||| ||||||| ||||||| ||||||||||||| ||  |||||| ||||||| |  ||| |||||||||    
T  24047098 gggagaatcgaacttgaaacctcgaggaggagcacactcccaagtctcaagccaataccatgagaccaacccaag 24047172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 107 - 193
Target Start/End: Complemental strand, 51703872 - 51703786
Alignment:
Q  107 taaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaa 193  Q
    ||||||||| |||| ||||||| ||| ||| || | || ||||||||||||| |||||  ||| ||||||| |||||| ||||||||    
T  51703872 taaattgataccagagagaatcgaacctgaaactttgaggaggagcacactcccagattccaagccaataccactagaccaacccaa 51703786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 158
Target Start/End: Complemental strand, 4825050 - 4825013
Alignment:
Q  121 ggagaatcaaacttgagacctcgaagaggagcacactc 158  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  4825050 ggagaatcaaacctgagaccttgaagaggagcacactc 4825013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 194
Target Start/End: Original strand, 33700766 - 33700843
Alignment:
Q  117 ccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaag 194  Q
    |||| ||||||| ||| |||||||| || ||||||||||||| |||||  ||| ||||||| |||||  |||||||||    
T  33700766 ccagagagaatcgaacctgagaccttgaggaggagcacactcccagattccaagccaataccactaggccaacccaag 33700843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 122 - 194
Target Start/End: Complemental strand, 9224853 - 9224781
Alignment:
Q  122 gagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaag 194  Q
    ||||||| ||| ||||||||| | ||| |||| |||| ||||||||||| |||||| || ||| |||||||||    
T  9224853 gagaatcgaacctgagacctcaaggagaagcatactctcagatctcaaagcaataccaccagaccaacccaag 9224781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 201
Target Start/End: Original strand, 25494038 - 25494146
Alignment:
Q  93 taaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaaccca 192  Q
    |||||||| ||||||||||||   | |||||||| | |||| |||||||||| ||| |||| ||||  ||||| ||| ||||||| ||||| ||||  ||    
T  25494038 taaattagcccatctaaattgtcactagggagaagcgaactcgagacctcgaggagaagcaaactcctagatcccaagccaataccactaggtcaattca 25494137  T
Q  193 agcgggttt 201  Q
    || ||||||    
T  25494138 agtgggttt 25494146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 87 - 183
Target Start/End: Original strand, 52336737 - 52336833
Alignment:
Q  87 agaaactaaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactag 183  Q
    ||||| |||||||| ||||| |||||||  |||| || |||| ||| ||||| ||  | ||||||||||||| |||||| ||| ||||||| |||||    
T  52336737 agaaattaaattagcccatccaaattgacaccagagataatcgaacctgagatcttaaggaggagcacactcccagatcccaagccaataccactag 52336833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 77 - 158
Target Start/End: Complemental strand, 28841537 - 28841456
Alignment:
Q  77 tttttcttttagaaactaaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactc 158  Q
    ||||| |||||||||||||||||| | |||||||||||  || | ||||||| |||||||||||| || |||||||||||||    
T  28841537 ttttttttttagaaactaaattagccaatctaaattgacaccggagagaatcgaacttgagaccttgaggaggagcacactc 28841456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 123 - 200
Target Start/End: Complemental strand, 30127477 - 30127400
Alignment:
Q  123 agaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggtt 200  Q
    |||||| ||| ||||||||||||||||||||||||| |||| | ||| ||||||| || ||| ||||||||| |||||    
T  30127477 agaatcgaacctgagacctcgaagaggagcacactcccagaccccaagccaataccaccagaccaacccaagtgggtt 30127400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 194
Target Start/End: Original strand, 6776585 - 6776677
Alignment:
Q  102 ccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaag 194  Q
    ||||| |||||||  |||| |||||||||||||||||| |||| ||||||||||| | |||||| ||| ||||||| || ||  |||||||||    
T  6776585 ccatccaaattgaaaccagagagaatcaaacttgagacatcgaggaggagcacacccccagatcccaagccaataccaccaggccaacccaag 6776677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 122 - 177
Target Start/End: Original strand, 13227156 - 13227211
Alignment:
Q  122 gagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatac 177  Q
    ||||||| |||||||||| |||| ||||||||||||| ||||||||| ||||||||    
T  13227156 gagaatcgaacttgagacttcgaggaggagcacactcccagatctcataccaatac 13227211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 87 - 182
Target Start/End: Complemental strand, 28364050 - 28363955
Alignment:
Q  87 agaaactaaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactacta 182  Q
    ||||| |||||||| ||||| |||||||  |||| || |||| ||  |||||||| || ||||||||||||| |||||| ||||||||||| ||||    
T  28364050 agaaattaaattagcccatccaaattgacaccagagataatcgaatctgagaccttgaggaggagcacactcgcagatcccaaaccaataccacta 28363955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 122 - 201
Target Start/End: Complemental strand, 33549182 - 33549103
Alignment:
Q  122 gagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggttt 201  Q
    ||||||| ||| ||||||||||| ||||||||||||| ||| || ||| ||||||| || ||| ||||||||| ||||||    
T  33549182 gagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccagaccaacccaagtgggttt 33549103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 201
Target Start/End: Original strand, 12188301 - 12188380
Alignment:
Q  122 gagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggttt 201  Q
    ||||||| ||||||| |||| || ||||||||||||| ||| || ||| ||||||| |||||  ||||||||| ||||||    
T  12188301 gagaatcgaacttgaaaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggttt 12188380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 31622994 - 31623069
Alignment:
Q  127 tcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggttta 202  Q
    |||||| ||||||||||| ||||||||||||| ||| || ||| ||||||| ||  || ||||||||| |||||||    
T  31622994 tcaaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccggaccaacccaagtgggttta 31623069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 77 - 183
Target Start/End: Complemental strand, 3715575 - 3715469
Alignment:
Q  77 tttttcttttagaaactaaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaata 176  Q
    ||||| ||| |||| |||||| || ||| |||||||||  |  | ||||||| ||||||||||||||| ||| |||| |||| ||||||||||  |||||    
T  3715575 tttttatttaagaagctaaatcagcccacctaaattgacactggagagaatcgaacttgagacctcgacgagaagcatactcccagatctcaagtcaata 3715476  T
Q  177 ctactag 183  Q
    | |||||    
T  3715475 ccactag 3715469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 34786452 - 34786509
Alignment:
Q  122 gagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatacta 179  Q
    ||||||| |||||||||| ||||  |||||||||||| |||||| ||| |||||||||    
T  34786452 gagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatacta 34786509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 77 - 174
Target Start/End: Complemental strand, 5934244 - 5934147
Alignment:
Q  77 tttttcttttagaaactaaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaa 174  Q
    ||||| ||| |||||||||||||||||| |||||||||  |||| | ||||| ||| ||| ||||| | ||||||||||||| |||||| ||| ||||    
T  5934244 tttttttttaagaaactaaattagtccacctaaattgacaccagagggaatcgaacatgaaacctcaaggaggagcacactcccagatcccaagccaa 5934147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 122 - 202
Target Start/End: Original strand, 13106780 - 13106859
Alignment:
Q  122 gagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggttta 202  Q
    ||||||| ||| |||||||| || |||||| |||||| |||||| |||| ||||||||||||||||||||||  |||||||    
T  13106780 gagaatcgaacctgagaccttgaggaggagtacactc-cagatcccaaatcaatactactagatcaacccaactgggttta 13106859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 177
Target Start/End: Complemental strand, 7721482 - 7721392
Alignment:
Q  87 agaaactaaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatac 177  Q
    |||| |||||||| |||||| |||||||  |||| ||||||| ||| |||||||| || |||||| |||||| ||| || |||||||||||    
T  7721482 agaagctaaattattccatccaaattgacaccagagagaatcgaacatgagaccttgaggaggagtacactcccaggtcccaaaccaatac 7721392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 200
Target Start/End: Complemental strand, 18363774 - 18363696
Alignment:
Q  122 gagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggtt 200  Q
    ||||||||||| |||||||| || ||||||||||||| || ||||||| || |||| |||||  ||||||||| |||||    
T  18363774 gagaatcaaacctgagaccttgaggaggagcacactcccaaatctcaagcctataccactaggccaacccaagtgggtt 18363696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 135 - 200
Target Start/End: Complemental strand, 25590676 - 25590611
Alignment:
Q  135 gagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggtt 200  Q
    |||||||||| ||||||||||||| |||||||||| ||||||| |  || |||||||||| |||||    
T  25590676 gagacctcgaggaggagcacactcccagatctcaagccaataccaacaggtcaacccaagtgggtt 25590611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 122 - 202
Target Start/End: Original strand, 17041010 - 17041090
Alignment:
Q  122 gagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggttta 202  Q
    ||||||| ||| |||||||| || ||||||||||||  |||||| ||| ||||| | |||||| ||||||||| |||||||    
T  17041010 gagaatcgaacctgagaccttgaggaggagcacacttccagatcccaagccaatgccactagaccaacccaagtgggttta 17041090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 177
Target Start/End: Complemental strand, 48772061 - 48771961
Alignment:
Q  77 tttttcttttagaaactaaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaata 176  Q
    ||||| ||| |||| ||||||||| ||| |||||||| | |  |||| |||| ||| ||||||||| | ||||||||||||| |||||| ||| ||||||    
T  48772061 tttttttttaagaagctaaattagcccacctaaattggtacttgggataatcgaacctgagacctcaaggaggagcacactcccagatcccaagccaata 48771962  T
Q  177 c 177  Q
    |    
T  48771961 c 48771961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 158
Target Start/End: Complemental strand, 15137666 - 15137595
Alignment:
Q  87 agaaactaaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactc 158  Q
    |||||||||||||| ||| | |||||||  |||| ||||||| ||| |||||||| || |||||||||||||    
T  15137666 agaaactaaattagcccacccaaattgacaccagagagaatctaacctgagaccttgaggaggagcacactc 15137595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 200
Target Start/End: Original strand, 20335800 - 20335907
Alignment:
Q  93 taaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaaccca 192  Q
    |||||||| ||||| |||||||   | | ||||||| ||| ||||||||||| ||||||||||||| ||  || ||| |||||||  ||||| |||||||    
T  20335800 taaattagcccatccaaattgacatcggtgagaatcgaacctgagacctcgaggaggagcacactcccaagtcccaagccaatacctctagaccaaccca 20335899  T
Q  193 agcgggtt 200  Q
    || |||||    
T  20335900 agtgggtt 20335907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 200
Target Start/End: Original strand, 26459403 - 26459486
Alignment:
Q  117 ccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggtt 200  Q
    |||| ||||||| ||| |||||||| || ||||||||||||| ||| || ||| ||||||| |||||  ||||||||| |||||    
T  26459403 ccagagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 26459486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 201
Target Start/End: Complemental strand, 43215262 - 43215183
Alignment:
Q  122 gagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggttt 201  Q
    ||||||| ||| |||||||| || |||||||||||||  || || ||| ||||||| |||||| ||||||||| ||||||    
T  43215262 gagaatcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaataccactagaccaacccaagtgggttt 43215183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 108 - 190
Target Start/End: Complemental strand, 2962551 - 2962469
Alignment:
Q  108 aaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacc 190  Q
    |||||| | |||| ||||||| ||| ||||| || || ||||||||||||||||| |  ||||||||||| |||||| |||||    
T  2962551 aaattggttccagagagaatcgaacctgagatcttgaggaggagcacactcacaggttccaaaccaataccactagaccaacc 2962469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 92 - 158
Target Start/End: Complemental strand, 42712066 - 42712000
Alignment:
Q  92 ctaaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactc 158  Q
    ||||||||| ||| |||||||||  | |||||||||| ||| |||||||| || |||||||||||||    
T  42712066 ctaaattagcccacctaaattgacactagggagaatcgaacatgagaccttgaggaggagcacactc 42712000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 200
Target Start/End: Original strand, 3280449 - 3280561
Alignment:
Q  87 agaaactaaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatc 186  Q
    |||| ||||||||||||||||||||||   || |||| |||| || ||||||||| || ||||||||||||| | | || ||| ||||||| || |  ||    
T  3280449 agaagctaaattagtccatctaaattggcaccggggataatcgaa-ttgagaccttgaggaggagcacactctcgggtcccaagccaataccaccatgtc 3280547  T
Q  187 aacccaagcgggtt 200  Q
    |||||||| |||||    
T  3280548 aacccaagtgggtt 3280561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 7499919 - 7499976
Alignment:
Q  119 agggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaata 176  Q
    |||||||||| ||| |||||||||||||||||||| |||| ||| || ||| ||||||    
T  7499919 agggagaatcgaacctgagacctcgaagaggagcaaactctcaggtcccaagccaata 7499976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 200
Target Start/End: Original strand, 39499718 - 39499795
Alignment:
Q  123 agaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggtt 200  Q
    |||||| ||| ||||||||  ||||||| ||||||||||| || ||| ||||||| |||||  ||||||||| |||||    
T  39499718 agaatcgaacatgagaccttaaagaggaacacactcacaggtcccaagccaataccactaggccaacccaagtgggtt 39499795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 141
Target Start/End: Original strand, 4566382 - 4566445
Alignment:
Q  77 tttttcttttagaaactaaattagtccatctaaattgatgccagggagaatcaaacttgagacct 141  Q
    ||||| ||| |||||||||||||| ||||||||||||   |||| ||||||||||| ||||||||    
T  4566382 tttttttttaagaaactaaattag-ccatctaaattggcaccagagagaatcaaacctgagacct 4566445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 122 - 158
Target Start/End: Complemental strand, 7309434 - 7309398
Alignment:
Q  122 gagaatcaaacttgagacctcgaagaggagcacactc 158  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  7309434 gagaatcgaacttgagacctcgaggaggagcacactc 7309398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 120 - 200
Target Start/End: Complemental strand, 22760943 - 22760863
Alignment:
Q  120 gggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggtt 200  Q
    ||||||||| ||| |||||||| || ||||||||||||| ||| || |||  |||||| || ||| ||||||||| |||||    
T  22760943 gggagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagtcaataccaccagaccaacccaagtgggtt 22760863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 23301600 - 23301636
Alignment:
Q  122 gagaatcaaacttgagacctcgaagaggagcacactc 158  Q
    ||||||||||||||||||||| | |||||||||||||    
T  23301600 gagaatcaaacttgagacctcaaggaggagcacactc 23301636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 200
Target Start/End: Original strand, 33869429 - 33869521
Alignment:
Q  108 aaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggtt 200  Q
    |||||||  |||| ||||||| |||  ||||||| ||  |||||||||||  ||| |||||| |||||||||||||  ||||||||| |||||    
T  33869429 aaattgacaccagagagaatcgaaccagagaccttgagaaggagcacacttccaggtctcaagccaatactactaggccaacccaagtgggtt 33869521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 125 - 193
Target Start/End: Original strand, 45709709 - 45709777
Alignment:
Q  125 aatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaa 193  Q
    |||| ||| ||||||||||| ||||||||||||| |||||| ||| | ||||| |||||  ||||||||    
T  45709709 aatcgaacctgagacctcgaggaggagcacactctcagatcccaagctaataccactaggccaacccaa 45709777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 200
Target Start/End: Original strand, 41601 - 41709
Alignment:
Q  92 ctaaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaaccc 191  Q
    ||||||||| ||| | |||||||   ||| ||||||  ||| ||||||||||| |||||||| |||| |||||||||| ||||||| |||||  ||||||    
T  41601 ctaaattagcccacccaaattgacatcagagagaattgaacctgagacctcgaggaggagcatactctcagatctcaagccaataccactaggccaaccc 41700  T
Q  192 aagcgggtt 200  Q
    ||| |||||    
T  41701 aagtgggtt 41709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 15321 - 15399
Alignment:
Q  122 gagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatactactagatcaacccaagcgggtt 200  Q
    ||||||| ||| ||||||||||| ||||||||||||| ||| || ||| ||||||| || ||| ||||||||| |||||    
T  15321 gagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccagaccaacccaagtgggtt 15399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 11611 - 11551
Alignment:
Q  117 ccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatac 177  Q
    |||| ||||||| ||| ||||||||||| ||||||||||||| |||||| ||| |||||||    
T  11611 ccagagagaatcgaacctgagacctcgaggaggagcacactcccagatcccaagccaatac 11551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 177
Target Start/End: Original strand, 13044 - 13099
Alignment:
Q  122 gagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatac 177  Q
    ||||||| ||| |||||||| || ||||||||||||| |||||||||| |||||||    
T  13044 gagaatcgaacctgagaccttgaggaggagcacactcccagatctcaagccaatac 13099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 77 - 200
Target Start/End: Complemental strand, 112407 - 112282
Alignment:
Q  77 tttttctttt--agaaactaaattagtccatctaaattgatgccagggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaa 174  Q
    ||||||||||  |||| ||||||||||||| ||||||||   || | ||||||| ||| | ||||||| ||||||| ||||||| |||||  ||| ||||    
T  112407 tttttctttttaagaagctaaattagtccacctaaattggcaccggagagaatcgaacctcagacctcaaagaggaccacactcccagattccaagccaa 112308  T
Q  175 tactactagatcaacccaagcgggtt 200  Q
    ||| || ||  ||||||||| |||||    
T  112307 tacaaccaggccaacccaagtgggtt 112282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 177
Target Start/End: Original strand, 2466 - 2523
Alignment:
Q  120 gggagaatcaaacttgagacctcgaagaggagcacactcacagatctcaaaccaatac 177  Q
    ||||||||| ||| |||||||| || ||||||||||||| ||||||  ||||||||||    
T  2466 gggagaatcgaacctgagaccttgaggaggagcacactcccagatccaaaaccaatac 2523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 157000 - 157040
Alignment:
Q  137 gacctcgaagaggagcacactcacagatctcaaaccaatac 177  Q
    |||||||| ||||||||||||| |||||||||| |||||||    
T  157000 gacctcgaggaggagcacactcccagatctcaagccaatac 157040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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