View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19651_high_9 (Length: 440)
Name: NF19651_high_9
Description: NF19651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19651_high_9 |
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| [»] scaffold0077 (2 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: scaffold0077 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: scaffold0077
Description:
Target: scaffold0077; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 15 - 426
Target Start/End: Complemental strand, 50962 - 50551
Alignment:
| Q |
15 |
aaagaattggtggttgttgattacaacactttaattgattatcactatgctttgtattcctatataatagtgactatataatactgatgactgcaagaag |
114 |
Q |
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| T |
50962 |
aaagaattggtggttgttgattacaacactttaattgattatcactatgctttttattcctatataatagtgcctatataatactgatgactgcaagaag |
50863 |
T |
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| Q |
115 |
ttatacgtatgcgtaactgctgcaaaagaaataaaatcaatacctatacaatgagaactggtgcaagaaaaagaaaattgcaggtagtttaaaccttgaa |
214 |
Q |
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| T |
50862 |
ttatacgtatgcgtaactgctgcaaaaaaaataaaatcaatacctatgcaatgagaactggtgcaagaaaaagaaaactgcaggtagtttaaaccttgaa |
50763 |
T |
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| Q |
215 |
acaattgcaacttacaaccatcatttgtttcttcctcaacnnnnnnnnctatcatttattccaacacaaaaattaaatgaaattaaagttaaccaaatcc |
314 |
Q |
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| T |
50762 |
acaattgcaacttacaaccatcatttgtttcttccacaacagaaaaaactatcatttattccaaaacaaaaatcaaacgaaattaaagttaaccaaatcc |
50663 |
T |
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| Q |
315 |
attgaacaattgaatggttgaaacattattgagagaagaagaaatacgtttgtggatatcacgtggaggaccatttcaaacaattttggctactacaaga |
414 |
Q |
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| T |
50662 |
attgaacaattgaatggttgaaacattattgagagaagaagaaatacgtttgtggatatcacgtggaggaccatttcaaacaattttggctactacaaga |
50563 |
T |
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| Q |
415 |
aaacacaggttc |
426 |
Q |
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| T |
50562 |
aaatacaggttc |
50551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077; HSP #2
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 15 - 426
Target Start/End: Complemental strand, 60710 - 60299
Alignment:
| Q |
15 |
aaagaattggtggttgttgattacaacactttaattgattatcactatgctttgtattcctatataatagtgactatataatactgatgactgcaagaag |
114 |
Q |
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| T |
60710 |
aaagaattggtggttgttgattacaacactttaattgattatcactatgctttttattcctatataatagtgcctatataatactgatgactgcaagaag |
60611 |
T |
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| Q |
115 |
ttatacgtatgcgtaactgctgcaaaagaaataaaatcaatacctatacaatgagaactggtgcaagaaaaagaaaattgcaggtagtttaaaccttgaa |
214 |
Q |
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| T |
60610 |
ttatacgtatgcgtaactgctgcaaaaaaaataaaatcaatacctatgcaatgagaactggtgcaagaaaaagaaaactgcaggtagtttaaaccttgaa |
60511 |
T |
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| Q |
215 |
acaattgcaacttacaaccatcatttgtttcttcctcaacnnnnnnnnctatcatttattccaacacaaaaattaaatgaaattaaagttaaccaaatcc |
314 |
Q |
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| T |
60510 |
acaattgcaacttacaaccatcatttgtttcttccacaacagaaaaaactatcatttattccaaaacaaaaatcaaacgaaattaaagttaaccaaatcc |
60411 |
T |
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| Q |
315 |
attgaacaattgaatggttgaaacattattgagagaagaagaaatacgtttgtggatatcacgtggaggaccatttcaaacaattttggctactacaaga |
414 |
Q |
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| T |
60410 |
attgaacaattgaatggttgaaacattattgagagaagaagaaatacgtttgtggatatcacgtggaggaccatttcaaacaattttggctactacaaga |
60311 |
T |
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| Q |
415 |
aaacacaggttc |
426 |
Q |
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| T |
60310 |
aaatacaggttc |
60299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 315 - 427
Target Start/End: Original strand, 41929792 - 41929904
Alignment:
| Q |
315 |
attgaacaattgaatggttgaaacattattgagagaagaagaaatacgtttgtggatatcacgtggaggaccatttcaaacaattttggctactacaaga |
414 |
Q |
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| T |
41929792 |
attgaacaattgaatggttgaaacattgttgagagaagaagaaatacgtttgtggatatcacgtggaggaccagttcaaacaattttggctactacaaga |
41929891 |
T |
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| Q |
415 |
aaacacaggttct |
427 |
Q |
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| T |
41929892 |
agatacaggttct |
41929904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 177 - 323
Target Start/End: Complemental strand, 22377512 - 22377363
Alignment:
| Q |
177 |
gcaagaaaaagaaaattgcaggta-gtttaaaccttgaaacaattgcaacttacaaccatcatttgtttcttcctcaac---nnnnnnnnctatcattta |
272 |
Q |
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| T |
22377512 |
gcaagaaaaagaaaactgcaggtacgtttaaaccttgaaataattgcaacttacaaccatcctttgttccttcctcaacaaaaaacaaaactatcattta |
22377413 |
T |
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| Q |
273 |
ttccaacacaaaaattaaatgaaattaaagttaaccaaatccattgaacaa |
323 |
Q |
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| T |
22377412 |
ttctaaaacaaaaatcaaacgaaattaaag-gaaccaaatccattgaacaa |
22377363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 177 - 254
Target Start/End: Original strand, 9368329 - 9368407
Alignment:
| Q |
177 |
gcaagaaaaagaaaattgcaggta-gtttaaaccttgaaacaattgcaacttacaaccatcatttgtttcttcctcaac |
254 |
Q |
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| T |
9368329 |
gcaagaaaaagaaaactgcaggtacgtttaaaccttgaaacaattgcaacttacaaccatcctttattccttcctcaac |
9368407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 323
Target Start/End: Original strand, 9368423 - 9368482
Alignment:
| Q |
263 |
ctatcatttattccaacacaaaaattaaatgaaattaaagttaaccaaatccattgaacaa |
323 |
Q |
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| T |
9368423 |
ctatcatttattccaaaacaaaaatcaaacgaaattaaa-agaaccaaacccattgaacaa |
9368482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 343 - 426
Target Start/End: Complemental strand, 209854 - 209770
Alignment:
| Q |
343 |
ttgagagaagaagaaatacgtttgtggatatcacgtggaggaccatttcaaacaa-ttttggctactacaagaaaacacaggttc |
426 |
Q |
| |
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||||||||||||||| ||||||||| ||||||| ||||| ||||||||||||||| |||||||||||||||||| | |||||||| |
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| T |
209854 |
ttgagagaagaagaattacgtttgtcgatatcatgtggaagaccatttcaaacaatttttggctactacaagaagatacaggttc |
209770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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