View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19651_low_10 (Length: 435)
Name: NF19651_low_10
Description: NF19651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19651_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 24 - 417
Target Start/End: Original strand, 50246665 - 50247058
Alignment:
| Q |
24 |
agtttccattatagcactgtattgtgaagatggagcatcaaagtccggtagcactagttgtcggagttacgggaatggttggactaagcttagccgaagc |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50246665 |
agtttccattatagcactgtattgtgaagatggagcatcaaagtccggtagcactagttgtcggagttacgggaatggttggactaagcttagccgaagc |
50246764 |
T |
|
| Q |
124 |
cttgaagcagcctgattgtctcggaggtccatggaaagtttacggcggtgctcgccgttccccagacgaatggttcccttcttccatcctagacggcttc |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50246765 |
cttgaagcagcctgattgtctcggaggtccatggaaagtttacggcggtgctcgccattccccagacgaatggttcccttcttccatcctagacggcttc |
50246864 |
T |
|
| Q |
224 |
atcacatttgacgcagttaactcagctgacacacacgccaaactattacatatagccaatgaagtcacccacatcttctgggtgacgttccagtttgtag |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
50246865 |
atcacatttgacgcagttaactcagctgacacacacgccaaactattacctatagccaatgaagtcacccacatcttctgggtgactttccagtttgtag |
50246964 |
T |
|
| Q |
324 |
cagatgaagaagttaacatcactgttaacaaatccatgctccataacgttgtcaccgttcttaaatcttctccatcttctcctctcacccatat |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50246965 |
aagatgaagaagttaacatcactgttaacaaatccatgctccataacgttgtcaccgttcttaaatcttctccatcttctcctctcacccatat |
50247058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 53 - 417
Target Start/End: Original strand, 50253831 - 50254195
Alignment:
| Q |
53 |
atggagcatcaaagtccggtagcactagttgtcggagttacgggaatggttggactaagcttagccgaagccttgaagcagcctgattgtctcggaggtc |
152 |
Q |
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|||| |||||||||||| ||||||||||| || ||||| |||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
50253831 |
atggcgcatcaaagtcccgtagcactagtagttggagtaacgggaatggctggcctaagcttagccaaagccttgaagcagcctgattgtctcggaggtc |
50253930 |
T |
|
| Q |
153 |
catggaaagtttacggcggtgctcgccgttccccagacgaatggttcccttcttccatcctagacggcttcatcacatttgacgcagttaactcagctga |
252 |
Q |
| |
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||||||||||||| |||| ||||||| |||||| || ||||||||||||||||||||||| ||| ||||||| || || |||||||||||||||||||| |
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| T |
50253931 |
catggaaagtttatggcgcagctcgccattcccccgatgaatggttcccttcttccatcctcgacagcttcataaccttcgacgcagttaactcagctga |
50254030 |
T |
|
| Q |
253 |
cacacacgccaaactattacatatagccaatgaagtcacccacatcttctgggtgacgttccagtttgtagcagatgaagaagttaacatcactgttaac |
352 |
Q |
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||||| |||||| ||||||| |||||| || |||||||||||| | |||||||| || |||||| |||||||||| ||||||||||| |||| |||||| |
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| T |
50254031 |
cacacgcgccaagctattacctatagctaacgaagtcacccacctattctgggtcacattccagcttgtagcagacgaagaagttaagatcagcgttaac |
50254130 |
T |
|
| Q |
353 |
aaatccatgctccataacgttgtcaccgttcttaaatcttctccatcttctcctctcacccatat |
417 |
Q |
| |
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||||||||||| | ||||||| |||| || || ||||||| ||| ||||| |||||||||||||| |
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| T |
50254131 |
aaatccatgcttcttaacgttctcactgtcctaaaatcttatccgtcttcgcctctcacccatat |
50254195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 71 - 417
Target Start/End: Complemental strand, 27644179 - 27643833
Alignment:
| Q |
71 |
gtagcactagttgtcggagttacgggaatggttggactaagcttagccgaagccttgaagcagcctgattgtctcggaggtccatggaaagtttacggcg |
170 |
Q |
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||||||||||| || ||||| |||||||||| ||| |||||| ||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||| | |
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| T |
27644179 |
gtagcactagtggttggagtaacgggaatggctgggctaagcctagccaaagccttgaagcagcctgattgtcttggaggcccatggaaagtttacggtg |
27644080 |
T |
|
| Q |
171 |
gtgctcgccgttccccagacgaatggttcccttcttccatcctagacggcttcatcacatttgacgcagttaactcagctgacacacacgccaaactatt |
270 |
Q |
| |
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|||||||| ||| | |||| ||||| || ||||||||||| || ||||||||||| |||||||| || ||||||||||||||||| | ||| || || |
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| T |
27644079 |
cagctcgccgctccgccgacggctggtttccctcttccatccttgatggcttcatcacctttgacgctgtcaactcagctgacacacatgacaagctgtt |
27643980 |
T |
|
| Q |
271 |
acatatagccaatgaagtcacccacatcttctgggtgacgttccagtttgtagcagatgaagaagttaacatcactgttaacaaatccatgctccataac |
370 |
Q |
| |
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|| ||| | | |||||||||||| |||||||||| || ||||||||||||| || ||||||| ||||||||| ||||||||| ||||||| | ||| |
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| T |
27643979 |
accactagtccaagaagtcacccacctcttctgggtcacattccagtttgtaggtgacgaagaagctaacatcaccgttaacaaaaccatgcttcttaat |
27643880 |
T |
|
| Q |
371 |
gttgtcaccgttcttaaatcttctccatcttctcctctcacccatat |
417 |
Q |
| |
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||| |||| || || ||||||||||||||||| |||||| |||||| |
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|
| T |
27643879 |
gttctcactgtcctcaaatcttctccatcttcctctctcatccatat |
27643833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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