View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19651_low_11 (Length: 378)
Name: NF19651_low_11
Description: NF19651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19651_low_11 |
 | |
|
| [»] scaffold0425 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 159 - 359
Target Start/End: Complemental strand, 6139142 - 6138942
Alignment:
| Q |
159 |
ccccatccatcttcctgtcttgttgattatttcaatttataaatcttgaaatatatggcctaataatgaaacaactcaagatatatgcattgatcatatc |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6139142 |
ccccatccatcttcctgtcttgttgattatttcaatttataaatcttgaaatctatggcctaataatgaaacaactcaagatatatgcattgatcatatc |
6139043 |
T |
|
| Q |
259 |
tctctctcgagccactttacgaaatccctttaacctatgtgtactgctgtctgcagattgataaattcaggtcctgctggtgagattctcccagccattt |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6139042 |
tctctctcgagccactttacgaaatccctttgacctatgtgtactgctgtctgcagattgataaattcaggtcctgctggtgagattctcccagccattt |
6138943 |
T |
|
| Q |
359 |
c |
359 |
Q |
| |
|
| |
|
|
| T |
6138942 |
c |
6138942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 159 - 359
Target Start/End: Original strand, 13282953 - 13283156
Alignment:
| Q |
159 |
ccccatccatcttcctgtcttgttgatta-----tttcaatttataaatcttgaaatatatggcctaataatgaaacaactcaagatatatgcattgatc |
253 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| || |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13282953 |
ccccatccatcttcctgtcttgttgattactccatttcacttcataaatcttgaaatctatggcctaataataaaacaactcaagatatatgcattgatc |
13283052 |
T |
|
| Q |
254 |
atatctctctctcgagccactttacgaaatccctttaacctatgtgtactgctgtctgcagattgataaattcaggtcctgctggtgagattctcccagc |
353 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| | || |||| |||||||| ||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
13283053 |
atatctc--tctcgagccactttacgaaatccctctgacttatgcgtactgctctctgcagattgataaatgctggtcctgctggtgagattctcccagc |
13283150 |
T |
|
| Q |
354 |
catttc |
359 |
Q |
| |
|
| |||| |
|
|
| T |
13283151 |
cgtttc |
13283156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 159 - 359
Target Start/End: Complemental strand, 6164457 - 6164259
Alignment:
| Q |
159 |
ccccatccatcttcctgtcttgttgattatttcaatttataaatcttgaaatatatggcctaataatgaaacaactcaagatatatgcattgatcatatc |
258 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6164457 |
ccccatccatcctcctgtcttgttgattatttcacttcataaatcttgaaatcaatggcctaataatgaaacaactcaagatatatgcattgatcatatc |
6164358 |
T |
|
| Q |
259 |
tctctctcgagccactttacgaaatccctttaacctatgtgtactgctgtctgcagattgataaattcaggtcctgctggtgagattctcccagccattt |
358 |
Q |
| |
|
| |||| ||||||| ||||||||||||| | || ||||||||||||| ||||||| |||||||| | ||||||||||||||||||||||||||| ||| |
|
|
| T |
6164357 |
t--ctcttgagccacattacgaaatccctctgacttatgtgtactgctccctgcagaatgataaatgctggtcctgctggtgagattctcccagccgttt |
6164260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 227 - 359
Target Start/End: Complemental strand, 6234178 - 6234048
Alignment:
| Q |
227 |
aaacaactcaagatatatgcattgatcatatctctctctcgagccactttacgaaatccctttaacctatgtgtactgctgtctgcagattgataaattc |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||| | |||||||||||||||| ||||||||||||||||| | |
|
|
| T |
6234178 |
aaacaactcaagatatatgcattgatcatatatctctc--gagacactttacgaaatccctctgacctatgtgtactgctctctgcagattgataaatgc |
6234081 |
T |
|
| Q |
327 |
aggtcctgctggtgagattctcccagccatttc |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
6234080 |
tggtcctgctggtgagattctcccagccatttc |
6234048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 232 - 359
Target Start/End: Complemental strand, 6241959 - 6241834
Alignment:
| Q |
232 |
actcaagatatatgcattgatcatatctctctctcgagccactttacgaaatccctttaacctatgtgtactgctgtctgcagattgataaattcaggtc |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| | ||||||||||||| || |||||||||||||||| | |||| |
|
|
| T |
6241959 |
actcaagatatatgcattgatcatatctctctc--gagccactttacggaatccctctgacctatgtgtacttctcactgcagattgataaatgctggtc |
6241862 |
T |
|
| Q |
332 |
ctgctggtgagattctcccagccatttc |
359 |
Q |
| |
|
||||||||||||||||||||||| |||| |
|
|
| T |
6241861 |
ctgctggtgagattctcccagccgtttc |
6241834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 6139286 - 6139208
Alignment:
| Q |
15 |
aatgaatattaacatcaacaataatactagatggatatgctgttttacttctttgtaacacttcgcaaatccagagaac |
93 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6139286 |
aatgaatattaacatcaacaataatacaagatggataagttgttttacttctttgtaacacttcgcaaatccagagaac |
6139208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 234 - 354
Target Start/End: Complemental strand, 6255185 - 6255068
Alignment:
| Q |
234 |
tcaagatatatgcattgatcatatctctctctcgagccactttacgaaatccctttaacctatgtgtactgctgtctgcagattgataaattcaggtcct |
333 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||| ||||||||||||||||| | |||| ||||||||||| | ||||||||||||||| | |||||| |
|
|
| T |
6255185 |
tcaagatataagcattgatcatatctctctc--gagtcactttacgaaatccctctgacctgtgtgtactgctctttgcagattgataaatgctggtcct |
6255088 |
T |
|
| Q |
334 |
gctggtgagattctcccagcc |
354 |
Q |
| |
|
|||||||||| |||||||||| |
|
|
| T |
6255087 |
gctggtgaga-tctcccagcc |
6255068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 13282809 - 13282857
Alignment:
| Q |
12 |
atgaatgaatattaacatcaacaataatactagatggatatgctgtttt |
60 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
13282809 |
atgaatgaatattaacatcaacaataatactagatggatatgttgtttt |
13282857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 6595065 - 6595122
Alignment:
| Q |
20 |
atattaacatcaacaataatactagatggatatgctgttttacttctttgtaacactt |
77 |
Q |
| |
|
|||||||||| |||| ||| | ||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
6595065 |
atattaacattgacaacaattcaagatggatatgttgttttacttctttgaaacactt |
6595122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 6858646 - 6858703
Alignment:
| Q |
20 |
atattaacatcaacaataatactagatggatatgctgttttacttctttgtaacactt |
77 |
Q |
| |
|
|||||||||| ||||| ||||| | | ||||||| ||||||||||||||| ||||||| |
|
|
| T |
6858646 |
atattaacattaacaacaatacaataaggatatgttgttttacttctttgaaacactt |
6858703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 265
Target Start/End: Original strand, 6859282 - 6859315
Alignment:
| Q |
232 |
actcaagatatatgcattgatcatatctctctct |
265 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |
|
|
| T |
6859282 |
actcaagatatatgcattgatcatgtctctctct |
6859315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 6165103 - 6165051
Alignment:
| Q |
12 |
atgaatgaatattaacatcaacaataatactagatggatatgctgttttactt |
64 |
Q |
| |
|
||||||||| ||||||||||| |||| ||| |||||||||| |||||||||| |
|
|
| T |
6165103 |
atgaatgaacattaacatcaataatagtacaagatggatataatgttttactt |
6165051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 15281 - 15338
Alignment:
| Q |
20 |
atattaacatcaacaataatactagatggatatgctgttttacttctttgtaacactt |
77 |
Q |
| |
|
|||||||||| ||||| ||||| | | ||||||| ||||||||||||||| ||||||| |
|
|
| T |
15281 |
atattaacattaacaacaatacaataaggatatgttgttttacttctttgaaacactt |
15338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University