View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19651_low_14 (Length: 299)

Name: NF19651_low_14
Description: NF19651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19651_low_14
NF19651_low_14
[»] chr6 (11 HSPs)
chr6 (7-299)||(27889798-27890086)
chr6 (185-299)||(27983985-27984099)
chr6 (23-133)||(27984123-27984237)
chr6 (150-223)||(8010260-8010332)
chr6 (150-203)||(31670969-31671022)
chr6 (43-83)||(27894076-27894116)
chr6 (42-81)||(3217120-3217159)
chr6 (142-203)||(4247720-4247781)
chr6 (162-223)||(8470094-8470155)
chr6 (150-202)||(27727167-27727220)
chr6 (184-224)||(32513711-32513751)
[»] chr4 (8 HSPs)
chr4 (140-224)||(24160578-24160663)
chr4 (142-217)||(30207656-30207731)
chr4 (150-232)||(19422312-19422394)
chr4 (43-83)||(679748-679788)
chr4 (150-208)||(30024618-30024676)
chr4 (152-221)||(3549627-3549695)
chr4 (47-83)||(11264331-11264367)
chr4 (187-223)||(24091368-24091404)
[»] chr3 (6 HSPs)
chr3 (150-209)||(16790182-16790241)
chr3 (154-223)||(25185896-25185965)
chr3 (150-227)||(48588564-48588641)
chr3 (154-220)||(28283675-28283741)
chr3 (150-207)||(16790450-16790507)
chr3 (44-83)||(32064469-32064508)
[»] chr2 (7 HSPs)
chr2 (150-223)||(10150658-10150731)
chr2 (184-223)||(26484212-26484251)
chr2 (150-214)||(17952795-17952859)
chr2 (150-202)||(28803600-28803652)
chr2 (142-223)||(10285764-10285845)
chr2 (199-232)||(29429916-29429949)
chr2 (48-81)||(40279439-40279472)
[»] chr1 (8 HSPs)
chr1 (154-223)||(4202227-4202296)
chr1 (184-223)||(41638438-41638477)
chr1 (184-225)||(4180723-4180764)
chr1 (153-202)||(14128568-14128617)
chr1 (150-223)||(52286581-52286654)
chr1 (47-83)||(11695891-11695927)
chr1 (43-83)||(33975600-33975640)
chr1 (47-83)||(36151509-36151545)
[»] chr7 (8 HSPs)
chr7 (184-232)||(46056136-46056184)
chr7 (151-202)||(6552365-6552416)
chr7 (184-223)||(38904859-38904898)
chr7 (189-223)||(38713222-38713256)
chr7 (45-83)||(39370822-39370860)
chr7 (150-223)||(21853210-21853283)
chr7 (183-223)||(39549393-39549433)
chr7 (150-202)||(44241784-44241836)
[»] chr8 (5 HSPs)
chr8 (150-204)||(29699176-29699230)
chr8 (150-227)||(40356770-40356847)
chr8 (150-205)||(34563171-34563226)
chr8 (150-198)||(11188249-11188297)
chr8 (150-202)||(40280299-40280351)
[»] chr5 (4 HSPs)
chr5 (162-223)||(40499781-40499842)
chr5 (183-223)||(1084233-1084273)
chr5 (184-223)||(34198338-34198377)
chr5 (183-227)||(2880660-2880704)
[»] scaffold0100 (1 HSPs)
scaffold0100 (151-205)||(42538-42592)
[»] scaffold0349 (1 HSPs)
scaffold0349 (150-202)||(5746-5799)
[»] scaffold0024 (1 HSPs)
scaffold0024 (150-223)||(23814-23887)
[»] scaffold0654 (1 HSPs)
scaffold0654 (184-223)||(6765-6805)
[»] scaffold0014 (1 HSPs)
scaffold0014 (184-223)||(116684-116724)


Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 7 - 299
Target Start/End: Original strand, 27889798 - 27890086
Alignment:
Q  7 cttatatgatacgtgagactatttggaagagcatattgatatgtccataaactgttttcaacatattttcataagctatcctcagctagttaagatagct 106  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  27889798 cttatatgataggtgagactatttggaagagcatattgatatgtccataaactgttttcaacatattttcataagctatcctgagctagttaggatagct 27889897  T
Q  107 tatgaaaactgtttatgttttatatgaaaatatatagtttgaattattttatctgttgttatagaaaaaacttgtttataagcacttatatgataaatgc 206  Q
    |||||||||||||||||| |||||||||||||    ||||||||||||||||||||||||||||||| |||||||  ||||||||| |||||||||||||    
T  27889898 tatgaaaactgtttatgtcttatatgaaaata----gtttgaattattttatctgttgttatagaaataacttgtacataagcactcatatgataaatgc 27889993  T
Q  207 ttaattaagttgtttattcaagcatgacattacttgttaatacccttttgcttgttttagttagtcttgctatattatgccaagattcttcaa 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27889994 ttaattaagttgtttattcaagcatgacattacttgttaatacccttttgcttgttttagttagtcttgctatattatgccaagattcttcaa 27890086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 185 - 299
Target Start/End: Complemental strand, 27984099 - 27983985
Alignment:
Q  185 taagcacttatatgataaatgcttaattaagttgtttattcaagcatgacattacttgttaatacccttttgcttgttttagttagtcttgctatattat 284  Q
    ||||| ||||||||||||||| ||| |||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||| |||||||||    
T  27984099 taagcccttatatgataaatggttacttaagttgtttattcaagcatggcattagttgttaatacccttttgcttggtttagttagtcttactatattat 27984000  T
Q  285 gccaagattcttcaa 299  Q
    |||||||||||||||    
T  27983999 gccaagattcttcaa 27983985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 23 - 133
Target Start/End: Complemental strand, 27984237 - 27984123
Alignment:
Q  23 gactatttggaagagcatattgatatgtccataaactgttttcaacatattttca----taagctatcctcagctagttaagatagcttatgaaaactgt 118  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    ||||||||||| |||||| || |||||||||||||||| ||    
T  27984237 gactatttggaagagcatattgacatgtccataaaccgttttcaacatattttcataattaagctatcctgagctagctaggatagcttatgaaaacagt 27984138  T
Q  119 ttatgttttatatga 133  Q
    || ||| ||||||||    
T  27984137 ttgtgtcttatatga 27984123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 8010332 - 8010260
Alignment:
Q  150 ttattttatctgttgttatagaaaaaacttgtttataagcacttatatgataaatgcttaattaagttgtttat 223  Q
    ||||||||| |||||||||||||| | ||| |   |||||||||||||||||||  ||||||||||||||||||    
T  8010332 ttattttat-tgttgttatagaaatagcttatacctaagcacttatatgataaacacttaattaagttgtttat 8010260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 203
Target Start/End: Original strand, 31670969 - 31671022
Alignment:
Q  150 ttattttatctgttgttatagaaaaaacttgtttataagcacttatatgataaa 203  Q
    ||||||||||| ||||||||||||  |||| | |||||||||||||||||||||    
T  31670969 ttattttatctattgttatagaaatgacttatatataagcacttatatgataaa 31671022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 83
Target Start/End: Complemental strand, 27894116 - 27894076
Alignment:
Q  43 tgatatgtccataaactgttttcaacatattttcataagct 83  Q
    |||||||||||||||||||||||| | ||||||||||||||    
T  27894116 tgatatgtccataaactgttttcagcttattttcataagct 27894076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 3217120 - 3217159
Alignment:
Q  42 ttgatatgtccataaactgttttcaacatattttcataag 81  Q
    |||||||||||||||| |||||||||| ||||||||||||    
T  3217120 ttgatatgtccataaaatgttttcaacttattttcataag 3217159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 4247720 - 4247781
Alignment:
Q  142 agtttgaattattttatctgttgttatagaaaaaacttgtttataagcacttatatgataaa 203  Q
    |||||||||| |||||||| |||||||||||| | ||| |  ||||||||||| ||||||||    
T  4247720 agtttgaatttttttatcttttgttatagaaatagcttatacataagcacttacatgataaa 4247781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 223
Target Start/End: Original strand, 8470094 - 8470155
Alignment:
Q  162 ttgttatagaaaaaacttgtttataagcacttatatgataaatgcttaattaagttgtttat 223  Q
    |||||| ||||| | ||| |||||||||||||||| |||||   ||||||||||||||||||    
T  8470094 ttgttacagaaatagcttatttataagcacttatacgataagcacttaattaagttgtttat 8470155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 27727167 - 27727220
Alignment:
Q  150 ttattttatctgttgttatagaaaa-aacttgtttataagcacttatatgataa 202  Q
    ||||||||||| |  |||||||||| ||||||| ||||||||||||||||||||    
T  27727167 ttattttatctttaattatagaaaataacttgtatataagcacttatatgataa 27727220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 32513751 - 32513711
Alignment:
Q  184 ataagcacttatatgataaatgcttaattaagttgtttatt 224  Q
    |||| ||||||||||||||| ||||||||||| ||||||||    
T  32513751 ataaacacttatatgataaacgcttaattaagctgtttatt 32513711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 140 - 224
Target Start/End: Original strand, 24160578 - 24160663
Alignment:
Q  140 atagtttgaatt-attttatctgttgttatagaaaaaacttgtttataagcacttatatgataaatgcttaattaagttgtttatt 224  Q
    |||||||||||| || |||||| |||||||||||||| ||| ||||||||||||||||||||||  | ||||||||||||||||||    
T  24160578 atagtttgaatttatattatcttttgttatagaaaaagcttatttataagcacttatatgataagcgtttaattaagttgtttatt 24160663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 217
Target Start/End: Original strand, 30207656 - 30207731
Alignment:
Q  142 agtttgaattattttatctgttgttatagaaaaaacttgtttataagcacttatatgataaatgcttaattaagtt 217  Q
    ||||||| ||||||||| | |||||||||||  ||| | |  ||||||||||||||||||| ||||||||||||||    
T  30207656 agtttgatttattttattttttgttatagaactaacatatacataagcacttatatgataagtgcttaattaagtt 30207731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 232
Target Start/End: Complemental strand, 19422394 - 19422312
Alignment:
Q  150 ttattttatctgttgttatagaaaaaacttgtttataagcacttatatgataaatgcttaattaagttgtttattcaagcatg 232  Q
    ||||| ||||| |||||||||||| ||||| |  ||||||| |||||||||||  ||||||||||| ||||||| ||| ||||    
T  19422394 ttattatatcttttgttatagaaataacttatacataagcatttatatgataagcgcttaattaagctgtttatccaaacatg 19422312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 83
Target Start/End: Complemental strand, 679788 - 679748
Alignment:
Q  43 tgatatgtccataaactgttttcaacatattttcataagct 83  Q
    |||||||| ||||||||||||||| ||||||||||||||||    
T  679788 tgatatgttcataaactgttttcagcatattttcataagct 679748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 30024676 - 30024618
Alignment:
Q  150 ttattttatctgttgttatagaaaaaacttgtttataagcacttatatgataaatgctt 208  Q
    ||||||||||| |||||||||||| ||||| |  ||||| |||||||||||||| ||||    
T  30024676 ttattttatcttttgttatagaaataacttatgcataagtacttatatgataaacgctt 30024618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 3549627 - 3549695
Alignment:
Q  152 attttatctgttgttatagaaaaaacttgtttataagcacttatatgataaatgcttaattaagttgttt 221  Q
    ||||||||| |||||||| || |||||| |  || ||||||||||| ||||| |||||||||||||||||    
T  3549627 attttatcttttgttata-aagaaacttatgcattagcacttatataataaacgcttaattaagttgttt 3549695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 83
Target Start/End: Complemental strand, 11264367 - 11264331
Alignment:
Q  47 atgtccataaactgttttcaacatattttcataagct 83  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  11264367 atgtccataaactgttttcaacttatttccataagct 11264331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 24091404 - 24091368
Alignment:
Q  187 agcacttatatgataaatgcttaattaagttgtttat 223  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  24091404 agcatttatatgataagtgcttaattaagttgtttat 24091368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 209
Target Start/End: Original strand, 16790182 - 16790241
Alignment:
Q  150 ttattttatctgttgttatagaaaaaacttgtttataagcacttatatgataaatgctta 209  Q
    ||||||||||| |||||||||||| ||||| | ||||||||||||||||||||| |||||    
T  16790182 ttattttatcttttgttatagaaataacttatatataagcacttatatgataaacgctta 16790241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 25185965 - 25185896
Alignment:
Q  154 tttatctgttgttatagaaaaaacttgtttataagcacttatatgataaatgcttaattaagttgtttat 223  Q
    ||||||| |||||||| ||| | ||| || ||||||||||||||||||||  ||||||||||||||||||    
T  25185965 tttatcttttgttatataaatatcttattcataagcacttatatgataaacacttaattaagttgtttat 25185896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 48588641 - 48588564
Alignment:
Q  150 ttattttatctgttgttatagaaaaaacttgtttataagcacttatatgataaatgcttaattaagttgtttattcaa 227  Q
    ||||||||| | || ||||||||| ||||| | | ||||| ||||||||||||  |||||||||||||||||||||||    
T  48588641 ttattttatattttattatagaaataacttatatgtaagctcttatatgataagagcttaattaagttgtttattcaa 48588564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 220
Target Start/End: Original strand, 28283675 - 28283741
Alignment:
Q  154 tttatctgttgttatagaaaaaacttgtttataagcacttatatgataaatgcttaattaagttgtt 220  Q
    ||||||| |||||||||||  ||||| |  |||||||||||||||||||| |||||||| |||||||    
T  28283675 tttatcttttgttatagaagtaacttatgcataagcacttatatgataaacgcttaattgagttgtt 28283741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 16790450 - 16790507
Alignment:
Q  150 ttattttatctgttgttatagaaaaaacttgtttataagcacttatatgataaatgct 207  Q
    |||||||||||||||||||| ||| | ||| |  ||||||||||||||||||||||||    
T  16790450 ttattttatctgttgttataaaaatagcttatacataagcacttatatgataaatgct 16790507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 83
Target Start/End: Complemental strand, 32064508 - 32064469
Alignment:
Q  44 gatatgtccataaactgttttcaacatattttcataagct 83  Q
    ||||| ||||||||||||||||||| ||||||||||||||    
T  32064508 gatatatccataaactgttttcaacttattttcataagct 32064469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 10150731 - 10150658
Alignment:
Q  150 ttattttatctgttgttatagaaaaaacttgtttataagcacttatatgataaatgcttaattaagttgtttat 223  Q
    ||||||||||| || ||||||||| ||||| |  |||| ||||||||| |||| ||||||||||||||||||||    
T  10150731 ttattttatcttttattatagaaataacttatacataaacacttatataataagtgcttaattaagttgtttat 10150658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 223
Target Start/End: Original strand, 26484212 - 26484251
Alignment:
Q  184 ataagcacttatatgataaatgcttaattaagttgtttat 223  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  26484212 ataagcacttatatgataaatgattaattaagttgtttat 26484251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 17952795 - 17952859
Alignment:
Q  150 ttattttatctgttgttatagaaaaaacttgtttataagcacttatatgataaatgcttaattaa 214  Q
    ||||||||||| |||||||||||| | ||| | ||||||| |||||||||||| ||||| |||||    
T  17952795 ttattttatcttttgttatagaaatagcttatatataagctcttatatgataagtgctttattaa 17952859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 28803600 - 28803652
Alignment:
Q  150 ttattttatctgttgttatagaaaaaacttgtttataagcacttatatgataa 202  Q
    ||||||||||| ||||||| |||| ||||| | ||||||||||||||||||||    
T  28803600 ttattttatcttttgttatcgaaataacttatatataagcacttatatgataa 28803652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 223
Target Start/End: Complemental strand, 10285845 - 10285764
Alignment:
Q  142 agtttgaattattttatctgttgttatagaaaaaacttgtttataagcacttatatgataaatgcttaattaagttgtttat 223  Q
    ||||||| ||||||| ||| ||| ||||||||    || | |||||||| ||||||| ||| ||||||||||||||||||||    
T  10285845 agtttgacttattttttcttttggtatagaaatgttttatgtataagcatttatatgttaagtgcttaattaagttgtttat 10285764  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 232
Target Start/End: Original strand, 29429916 - 29429949
Alignment:
Q  199 ataaatgcttaattaagttgtttattcaagcatg 232  Q
    ||||||||||||||||||||||||||||| ||||    
T  29429916 ataaatgcttaattaagttgtttattcaaacatg 29429949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 40279472 - 40279439
Alignment:
Q  48 tgtccataaactgttttcaacatattttcataag 81  Q
    ||||||||||||||||||||| ||||||||||||    
T  40279472 tgtccataaactgttttcaacttattttcataag 40279439  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 223
Target Start/End: Original strand, 4202227 - 4202296
Alignment:
Q  154 tttatctgttgttatagaaaaaacttgtttataagcacttatatgataaatgcttaattaagttgtttat 223  Q
    ||||||| |||||||||||| ||||| |   ||||||||||||||||||| |||||||||||||| ||||    
T  4202227 tttatcttttgttatagaaataacttatacttaagcacttatatgataaacgcttaattaagttgcttat 4202296  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 223
Target Start/End: Original strand, 41638438 - 41638477
Alignment:
Q  184 ataagcacttatatgataaatgcttaattaagttgtttat 223  Q
    ||||||||||||||||||| |||||||| |||||||||||    
T  41638438 ataagcacttatatgataagtgcttaatcaagttgtttat 41638477  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 4180723 - 4180764
Alignment:
Q  184 ataagcacttatatgataaatgcttaattaagttgtttattc 225  Q
    ||||||||||||||||||| |||||||||||  |||||||||    
T  4180723 ataagcacttatatgataagtgcttaattaaactgtttattc 4180764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 14128568 - 14128617
Alignment:
Q  153 ttttatctgttgttatagaaaaaacttgtttataagcacttatatgataa 202  Q
    |||||||||||||| |||||| |||||   ||||||||||||||||||||    
T  14128568 ttttatctgttgttttagaaataacttacatataagcacttatatgataa 14128617  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 52286654 - 52286581
Alignment:
Q  150 ttattttatctgttgttatagaaaaaacttgtttataagcacttatatgataaatgcttaattaagttgtttat 223  Q
    ||||||||||| ||||| |||||| | ||| || |||||| ||||||||||||  ||| |||||||| ||||||    
T  52286654 ttattttatcttttgttgtagaaatatcttattcataagcgcttatatgataagcgctaaattaagtggtttat 52286581  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 83
Target Start/End: Complemental strand, 11695927 - 11695891
Alignment:
Q  47 atgtccataaactgttttcaacatattttcataagct 83  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  11695927 atgtccataagctgttttcaacttattttcataagct 11695891  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 83
Target Start/End: Complemental strand, 33975640 - 33975600
Alignment:
Q  43 tgatatgtccataaactgttttcaacatattttcataagct 83  Q
    ||||||||||||||||| |||||| | ||||||||||||||    
T  33975640 tgatatgtccataaactattttcagcttattttcataagct 33975600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 36151509 - 36151545
Alignment:
Q  47 atgtccataaactgttttcaacatattttcataagct 83  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  36151509 atgtccataacctgttttcaacttattttcataagct 36151545  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 46056136 - 46056184
Alignment:
Q  184 ataagcacttatatgataaatgcttaattaagttgtttattcaagcatg 232  Q
    ||||||||||| |||||||||||||||||||||||||||| ||| ||||    
T  46056136 ataagcacttaaatgataaatgcttaattaagttgtttatccaaacatg 46056184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 151 - 202
Target Start/End: Original strand, 6552365 - 6552416
Alignment:
Q  151 tattttatctgttgttatagaaaaaacttgtttataagcacttatatgataa 202  Q
    |||||||||| ||||| |||||| |||||||  |||||||||||||||||||    
T  6552365 tattttatcttttgttgtagaaataacttgtacataagcacttatatgataa 6552416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 223
Target Start/End: Complemental strand, 38904898 - 38904859
Alignment:
Q  184 ataagcacttatatgataaatgcttaattaagttgtttat 223  Q
    ||||||||||||| |||||| |||||||||||||||||||    
T  38904898 ataagcacttataagataaaagcttaattaagttgtttat 38904859  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 38713222 - 38713256
Alignment:
Q  189 cacttatatgataaatgcttaattaagttgtttat 223  Q
    |||||||| ||||||||||||||||||||||||||    
T  38713222 cacttataagataaatgcttaattaagttgtttat 38713256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 39370860 - 39370822
Alignment:
Q  45 atatgtccataaactgttttcaacatattttcataagct 83  Q
    |||||||||||||||||||||||| ||||||||| ||||    
T  39370860 atatgtccataaactgttttcaacttattttcattagct 39370822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 21853210 - 21853283
Alignment:
Q  150 ttattttatctgttgttatagaaaaaacttgtttataagcacttatatgataaatgcttaattaagttgtttat 223  Q
    ||||||||||| |||| ||||||| ||||| | ||||| ||||||||  ||||||  ||||||||| |||||||    
T  21853210 ttattttatcttttgtaatagaaataacttatatataatcacttatactataaattattaattaagctgtttat 21853283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 39549393 - 39549433
Alignment:
Q  183 tataagcacttatatgataaatgcttaattaagttgtttat 223  Q
    |||||||  ||| ||||||||||||||||||||||||||||    
T  39549393 tataagcgtttacatgataaatgcttaattaagttgtttat 39549433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 44241836 - 44241784
Alignment:
Q  150 ttattttatctgttgttatagaaaaaacttgtttataagcacttatatgataa 202  Q
    |||||||||||||||||||||||| ||||| |  |||  ||||||||||||||    
T  44241836 ttattttatctgttgttatagaaataacttatacatacacacttatatgataa 44241784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 204
Target Start/End: Complemental strand, 29699230 - 29699176
Alignment:
Q  150 ttattttatctgttgttatagaaaaaacttgtttataagcacttatatgataaat 204  Q
    ||||||||||| |||||||||||| |||||||  ||||||| |||||||||||||    
T  29699230 ttattttatcttttgttatagaaataacttgtacataagcatttatatgataaat 29699176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 40356847 - 40356770
Alignment:
Q  150 ttattttatctgttgttatagaaaaaacttgtttataagcacttatatgataaatgcttaattaagttgtttattcaa 227  Q
    ||||||||||| || ||||| ||| | ||| |  |||||||||||||||| || || |||||||||||||||||||||    
T  40356847 ttattttatcttttattatataaatagcttatagataagcacttatatgacaagtgtttaattaagttgtttattcaa 40356770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 205
Target Start/End: Complemental strand, 34563226 - 34563171
Alignment:
Q  150 ttattttatctgttgttatagaaaaaacttgtttataagcacttatatgataaatg 205  Q
    ||||||||||  |||| ||||||| ||||| | |||||||||||||||||||||||    
T  34563226 ttattttatcctttgtcatagaaataacttatatataagcacttatatgataaatg 34563171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 198
Target Start/End: Original strand, 11188249 - 11188297
Alignment:
Q  150 ttattttatctgttgttatagaaaaaacttgtttataagcacttatatg 198  Q
    ||||||||||| |||||||||||| ||||| |  |||||||||||||||    
T  11188249 ttattttatcttttgttatagaaacaacttatacataagcacttatatg 11188297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 40280299 - 40280351
Alignment:
Q  150 ttattttatctgttgttatagaaaaaacttgtttataagcacttatatgataa 202  Q
    ||||||||||| ||||| |||||| ||||| | |||| |||||||||||||||    
T  40280299 ttattttatcttttgttgtagaaataacttatatataggcacttatatgataa 40280351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 223
Target Start/End: Original strand, 40499781 - 40499842
Alignment:
Q  162 ttgttatagaaaaaacttgtttataagcacttatatgataaatgcttaattaagttgtttat 223  Q
    |||||||||||| |||||||  |||||||||||||||||||    |||||||||||||||||    
T  40499781 ttgttatagaaataacttgtacataagcacttatatgataagcttttaattaagttgtttat 40499842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 1084233 - 1084273
Alignment:
Q  183 tataagcacttatatgataaatgcttaattaagttgtttat 223  Q
    |||||||||||||||||||||  ||||||||||||||||||    
T  1084233 tataagcacttatatgataaacacttaattaagttgtttat 1084273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 223
Target Start/End: Complemental strand, 34198377 - 34198338
Alignment:
Q  184 ataagcacttatatgataaatgcttaattaagttgtttat 223  Q
    ||||||||||||||||||| ||||||||||||||| ||||    
T  34198377 ataagcacttatatgataagtgcttaattaagttgattat 34198338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 2880660 - 2880704
Alignment:
Q  183 tataagcacttatatgataaatgcttaattaagttgtttattcaa 227  Q
    ||||||||||||||||||||| ||||| |||||||  ||||||||    
T  2880660 tataagcacttatatgataaaagcttagttaagtttcttattcaa 2880704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 205
Target Start/End: Complemental strand, 42592 - 42538
Alignment:
Q  151 tattttatctgttgttatagaaaaaacttgtttataagcacttatatgataaatg 205  Q
    |||||||||| ||||||||||||  |||| |  ||||||||||||||||||||||    
T  42592 tattttatcttttgttatagaaatgacttatacataagcacttatatgataaatg 42538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 5746 - 5799
Alignment:
Q  150 ttattttatctgttgttatagaaaa-aacttgtttataagcacttatatgataa 202  Q
    ||||||||||| |  |||||||||| ||||||| ||||||||||||||||||||    
T  5746 ttattttatctttaattatagaaaataacttgtatataagcacttatatgataa 5799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 23887 - 23814
Alignment:
Q  150 ttattttatctgttgttatagaaaaaacttgtttataagcacttatatgataaatgcttaattaagttgtttat 223  Q
    |||||| |||| |||||||||||| | ||| | | ||||| ||| |||||||| || |||||||||||||||||    
T  23887 ttatttcatcttttgttatagaaatagcttatatgtaagcgcttttatgataagtgtttaattaagttgtttat 23814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 223
Target Start/End: Original strand, 6765 - 6805
Alignment:
Q  184 ataagcacttatatgataaatgctta-attaagttgtttat 223  Q
    ||||||||||||||||||| |||||| ||||||||||||||    
T  6765 ataagcacttatatgataagtgcttatattaagttgtttat 6805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 223
Target Start/End: Original strand, 116684 - 116724
Alignment:
Q  184 ataagcacttatatgataaatgctta-attaagttgtttat 223  Q
    ||||||||||||||||||| |||||| ||||||||||||||    
T  116684 ataagcacttatatgataagtgcttatattaagttgtttat 116724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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