View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19651_low_2 (Length: 744)
Name: NF19651_low_2
Description: NF19651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19651_low_2 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 690; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 690; E-Value: 0
Query Start/End: Original strand, 18 - 727
Target Start/End: Original strand, 36938993 - 36939702
Alignment:
| Q |
18 |
gtttatagaggttttcttaaagacacaaaatcttacgttgctattaagagggtgtcagaagattcacatcaagggataaaagagttcgcatcagaagtaa |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
36938993 |
gtttatagaggttttcttaaagacacaaaatcttatgttgctgttaagagggtgtcagaagattcacatcaaggaataaaggagttcgcatcagaagtaa |
36939092 |
T |
|
| Q |
118 |
caactattagcaaattaaggcatagaaatctagtgcaattgattggttggtgtcatgaaagaaaaaagcttttacttgtatatgagtacatgccaaatgg |
217 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36939093 |
caattattagcaaattaaggcatagaaatctagtgcaattgattggttggtgtcatgaaagaaaaaagcttttacttgtatatgagtacatgccaaatgg |
36939192 |
T |
|
| Q |
218 |
tagtttagacattcatcttttcaaaaatcaaagtttcttgaaatggggtgttagatatacaatagctagaggcttggcttctgcactgttatatttgcat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36939193 |
tagtttagacattcatcttttcaaaaatcaaagtttcttgaaatggggtgttagatatacaatagctagaggcttggcttctgcactgttatatttgcat |
36939292 |
T |
|
| Q |
318 |
gaagaatgggaacaatgtgttgtacatagagacataaaagcaagtaacatcatgttggattcagagtttaatgcaaaacttggagatttcggtttagcaa |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36939293 |
gaagaatgggaacaatgtgttgtacatagagacataaaagcaagtaacatcatgttggattcagagtttaatgcaaaacttggagatttcggtttagcaa |
36939392 |
T |
|
| Q |
418 |
ggtttgtggaccatgcaaaaggtgcacaaactacagctttagcagggactttgggatacatggctcctgaatgtgctaccacaggaagagctagtaaaga |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36939393 |
ggtttgtggaccatgcaaaaggtgcacaaactacagctttagcagggactttgggatacatggctcctgaatgtgctaccacaggaagagctagtaaaga |
36939492 |
T |
|
| Q |
518 |
aacagacgtgtatagttttggtattgttgctttagagatagcttgcggaagaaaacctataataaaccttaaggctcaagaaaatgaaatacatattgtg |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36939493 |
aacagacgtgtatagttttggtattgttgctttagagatagcttgcggaagaaaacctataataaaccttaaggctcaagaaaatgaaatacatattgtg |
36939592 |
T |
|
| Q |
618 |
gagtgggtttgggggctatatggaagagggaaaattcttgaagcagtagatccaaaactagatggagattttgaacaagaacaaatcaagtgcatgatga |
717 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36939593 |
gagtgggtttgggggctatatggaagagggaaaattcttgaagcagtagatccaaaactagatggagattttgaacaagaacaaatcaagtgcatgatga |
36939692 |
T |
|
| Q |
718 |
ttgttggtct |
727 |
Q |
| |
|
|||||||||| |
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|
| T |
36939693 |
ttgttggtct |
36939702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 18 - 727
Target Start/End: Complemental strand, 36942125 - 36941422
Alignment:
| Q |
18 |
gtttatagaggttttcttaaagacacaaaatcttacgttgctattaagagggtgtcagaagattcacatcaagggataaaagagttcgcatcagaagtaa |
117 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||| || || ||||||||||||| |
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|
| T |
36942125 |
gtttatagaggctttctaaaagacacaaaatcttatgttgctattaagagtgtgtcagaagattctcatcaagggataaaggaatttgcatcagaagtaa |
36942026 |
T |
|
| Q |
118 |
caactattagcaaattaaggcatagaaatctagtgcaattgattggttggtgtcatgaaagaaaaaagcttttacttgtatatgagtacatgccaaatgg |
217 |
Q |
| |
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| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| || || ||||| |||||||||||||||||||| |
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| T |
36942025 |
cgataattagcaaattaaggcatagaaatctagtgcaattgattggttggtgtcatcaaaggaaaaaactcttgcttgtgtatgagtacatgccaaatgg |
36941926 |
T |
|
| Q |
218 |
tagtttagacattcatcttttcaaaaatcaaagtttcttgaaatggggtgttagatatacaatagctagaggcttggcttctgcactgttatatttgcat |
317 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||| |||| || |||||| |
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| T |
36941925 |
tagtttagacattcatcttttcaagaaacaaagtttgttgaaatggggtgttagatatacaatagctaaaggcttggcatctgcattgttgtacttgcat |
36941826 |
T |
|
| Q |
318 |
gaagaatgggaacaatgtgttgtacatagagacataaaagcaagtaacatcatgttggattcagagtttaatgcaaaacttggagatttcggtttagcaa |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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|
| T |
36941825 |
gaagaatgggaacaatgtgttgtacatagagacataaaagcaagtaacatcatgttggattcagaatttaacgcaaaacttggagatttcggtttagcaa |
36941726 |
T |
|
| Q |
418 |
ggtttgtggaccatgcaaaaggtgcacaaactacagctttagcagggactttgggatacatggctcctgaatgtgctaccacaggaagagctagtaaaga |
517 |
Q |
| |
|
|||||||||| ||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||| |
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|
| T |
36941725 |
ggtttgtggatcatgcaaaaggtggacaaaccacagctttagcagggactatgggatacatggctcctgaatgtgctaccacaggaagggccagtaaaga |
36941626 |
T |
|
| Q |
518 |
aacagacgtgtatagttttggtattgttgctttagagatagcttgcggaagaaaacctataataaaccttaaggctcaagaaaatgaaatacatattgtg |
617 |
Q |
| |
|
||| || |||||||||||||| ||||||||||||||||||||||| ||||||||||| |||| |||| |||||||||||||||||| | |||||| |
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|
| T |
36941625 |
aaccgatgtgtatagttttggaattgttgctttagagatagcttgtggaagaaaaccaataa------ttaatgctcaagaaaatgaaataaacattgtg |
36941532 |
T |
|
| Q |
618 |
gagtgggtttgggggctatatggaagagggaaaattcttgaagcagtagatccaaaactagatggagattttgaacaagaacaaatcaagtgcatgatga |
717 |
Q |
| |
|
|| |||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||| |||| | |||||||||||||||||||||| |
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| T |
36941531 |
gaatgggtttgggggctatatggaagagggagaattgttgaagcagtagatccaagactagatggagattatgaagaggaacaaatcaagtgcatgatga |
36941432 |
T |
|
| Q |
718 |
ttgttggtct |
727 |
Q |
| |
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|||||||||| |
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|
| T |
36941431 |
ttgttggtct |
36941422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 376
Target Start/End: Original strand, 36934468 - 36934535
Alignment:
| Q |
309 |
tatttgcatgaagaatgggaacaatgtgttgtacatagagacataaaagcaagtaacatcatgttgga |
376 |
Q |
| |
|
|||||||| |||||||||||| ||||||| | ||||| ||||||||| |||| ||||| |||||||| |
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|
| T |
36934468 |
tatttgcaggaagaatgggaaaaatgtgtgattcatagggacataaaatcaagcaacataatgttgga |
36934535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 279 - 409
Target Start/End: Original strand, 36949483 - 36949613
Alignment:
| Q |
279 |
atagctagaggcttggcttctgcactgttatatttgcatgaagaatgggaacaatgtgttgtacatagagacataaaagcaagtaacatcatgttggatt |
378 |
Q |
| |
|
||||||||||| ||||| || ||| | || || |||||||||| || || || ||||| ||||||||||||||||| |||| || | |||||||||| |
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| T |
36949483 |
atagctagaggtttggcctcggcattattgtacctgcatgaagagtgtgagcattgtgtgctacatagagacataaaatcaagcaatgttatgttggatt |
36949582 |
T |
|
| Q |
379 |
cagagtttaatgcaaaacttggagatttcgg |
409 |
Q |
| |
|
| | || ||| |||| |||||||||||||| |
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|
| T |
36949583 |
ctaatttcaatacaaagcttggagatttcgg |
36949613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 279 - 409
Target Start/End: Original strand, 36959617 - 36959747
Alignment:
| Q |
279 |
atagctagaggcttggcttctgcactgttatatttgcatgaagaatgggaacaatgtgttgtacatagagacataaaagcaagtaacatcatgttggatt |
378 |
Q |
| |
|
||||||||||| ||||| || ||| | || || |||||||||| || || || ||||| ||||||||||||||||| |||| || | |||||||||| |
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|
| T |
36959617 |
atagctagaggtttggcctcggcattattgtacctgcatgaagagtgtgagcattgtgtgctacatagagacataaaatcaagcaatgttatgttggatt |
36959716 |
T |
|
| Q |
379 |
cagagtttaatgcaaaacttggagatttcgg |
409 |
Q |
| |
|
| | || ||| |||| |||||||||||||| |
|
|
| T |
36959717 |
ctaatttcaatacaaagcttggagatttcgg |
36959747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 291 - 376
Target Start/End: Original strand, 47871573 - 47871658
Alignment:
| Q |
291 |
ttggcttctgcactgttatatttgcatgaagaatgggaacaatgtgttgtacatagagacataaaagcaagtaacatcatgttgga |
376 |
Q |
| |
|
|||||||| ||| |||| ||| | ||||||||||||||||||||||| | ||||||||||||||| | || ||||| |||||||| |
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|
| T |
47871573 |
ttggcttcggcattgttgtatcttcatgaagaatgggaacaatgtgtgattcatagagacataaaatccagcaacattatgttgga |
47871658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 228
Target Start/End: Complemental strand, 19222 - 19153
Alignment:
| Q |
159 |
attggttggtgtcatgaaagaaaaaagcttttacttgtatatgagtacatgccaaatggtagtttagaca |
228 |
Q |
| |
|
||||||||||| ||||||| ||| ||||| | ||||| ||||||| |||||||||||| |||||||||| |
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|
| T |
19222 |
attggttggtgctatgaaagtaaagagcttctccttgtttatgagttcatgccaaatggaagtttagaca |
19153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 500 - 559
Target Start/End: Complemental strand, 3054491 - 3054432
Alignment:
| Q |
500 |
aggaagagctagtaaagaaacagacgtgtatagttttggtattgttgctttagagatagc |
559 |
Q |
| |
|
|||||| |||||||||||| | ||| ||||||||||||| ||||||||||| ||| |||| |
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|
| T |
3054491 |
aggaagggctagtaaagaatctgacatgtatagttttggaattgttgctttggagctagc |
3054432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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