View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19651_low_21 (Length: 260)
Name: NF19651_low_21
Description: NF19651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19651_low_21 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 45274102 - 45273842
Alignment:
| Q |
1 |
gttcaaagcaacaggcagtactaccgcaattgtcttgtctctggta-ccgttgacttcatctttggatcatctgctaccttgatccaacactctacaatc |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45274102 |
gttcaaagcaacaggcagtactaccgcaattgtcttgtctctggtaaccgttgacttcatctttggatcatctgctaccttgatccaacactctacaatc |
45274003 |
T |
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| Q |
100 |
attgtaagaaagcctggcaaagggcaattcaacacaattaccgcagacggatcagacacgatgaatttgaatactggtattgtgatccaggattgcaata |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45274002 |
attgtaagaaagcctggcaaagggcaattcaacacaattaccgcagacggatcagacacgatgaatttgaatactggtattgtgatccaggattgcaata |
45273903 |
T |
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| Q |
200 |
tcatcccagaagcagcattgttcccagatagattcacaattcggtcttacttgggcagacc |
260 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
45273902 |
tcatcccagaagcagcattgttcccagaaagattcacaattcggtcttacttgggcagacc |
45273842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 45282345 - 45282086
Alignment:
| Q |
1 |
gttcaaagcaacaggcagtactaccgcaattgtcttgtctctggtaccgttgacttcatctttggatcatctgctaccttgatccaacactctacaatca |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45282345 |
gttcaaagcaacagacagtactaccgcaattgtcttgtctcgggtaccgttgacttcatctttggatcatctgctaccttgatccaacactctacaatca |
45282246 |
T |
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| Q |
101 |
ttgtaagaaagcctggcaaagggcaattcaacacaattaccgcagacggatcagacacgatgaatttgaatactggtattgtgatccaggattgcaatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45282245 |
ttgtaagaaagcctggcaaagggcaattcaacacaattactgcagacggatcagacacgatgaatttgaatactggtattgtgatccaggattgcaatat |
45282146 |
T |
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| Q |
201 |
catcccagaagcagcattgttcccagatagattcacaattcggtcttacttgggcagacc |
260 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
45282145 |
catcccagaagcagcattgttcccagaaagattcacaattcggtcttacttgggcagacc |
45282086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 45293685 - 45293426
Alignment:
| Q |
1 |
gttcaaagcaacaggcagtactaccgcaattgtcttgtctctggtaccgttgacttcatctttggatcatctgctaccttgatccaacactctacaatca |
100 |
Q |
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||||||| ||||||||| | ||||||||||||| || |||||||||||||||| |||||||||||| ||||||| |||||||||||| ||||||| |||| |
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| T |
45293685 |
gttcaaaccaacaggcaattctaccgcaattgtgttatctctggtaccgttgatttcatctttggaacatctgccaccttgatccaagactctacgatca |
45293586 |
T |
|
| Q |
101 |
ttgtaagaaagcctggcaaagggcaattcaacacaattaccgcagacggatcagacacgatgaatttgaatactggtattgtgatccaggattgcaatat |
200 |
Q |
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| ||||||| |||| | | |||||||||||||||||||||||||| ||| || || || ||||||||||||||||||||||| | |||||||| |
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| T |
45293585 |
tcgtaagaatgccttccccaaatcaattcaacacaattaccgcagacgggtcatacgtgaataaattgaatactggtattgtgatccaaggctgcaatat |
45293486 |
T |
|
| Q |
201 |
catcccagaagcagcattgttcccagatagattcacaattcggtcttacttgggcagacc |
260 |
Q |
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|||||||||||||||||||||| | |||||||||||| ||||||||||||||||| |
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| T |
45293485 |
tgtcccagaagcagcattgttccctcaaagattcacaattaaatcttacttgggcagacc |
45293426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 45302645 - 45302386
Alignment:
| Q |
1 |
gttcaaagcaacaggcagtactaccgcaattgtcttgtctctggtaccgttgacttcatctttggatcatctgctaccttgatccaacactctacaatca |
100 |
Q |
| |
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||||||| ||||||||| | ||||||||||||| || |||||||||||||||| |||||||||||| ||||||| |||||||||||| ||||||| |||| |
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| T |
45302645 |
gttcaaaccaacaggcaattctaccgcaattgtgttatctctggtaccgttgatttcatctttggaacatctgccaccttgatccaagactctacgatca |
45302546 |
T |
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| Q |
101 |
ttgtaagaaagcctggcaaagggcaattcaacacaattaccgcagacggatcagacacgatgaatttgaatactggtattgtgatccaggattgcaatat |
200 |
Q |
| |
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| ||||||| |||| | | |||||||||||||||||||||||||| ||| || || || ||||||||||||||||||||||| | |||||||| |
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| T |
45302545 |
tcgtaagaatgccttccccaaatcaattcaacacaattaccgcagacgggtcatacgtgaataaattgaatactggtattgtgatccaaggctgcaatat |
45302446 |
T |
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| Q |
201 |
catcccagaagcagcattgttcccagatagattcacaattcggtcttacttgggcagacc |
260 |
Q |
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| T |
45302445 |
tgtcccagaagcagcattgttccctcaaagattcacaattaaatcttacttgggcagacc |
45302386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 161 - 260
Target Start/End: Complemental strand, 45270409 - 45270310
Alignment:
| Q |
161 |
tgaatttgaatactggtattgtgatccaggattgcaatatcatcccagaagcagcattgttcccagatagattcacaattcggtcttacttgggcagacc |
260 |
Q |
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||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||| || | ||||||| || ||||||||||||||||||| |
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| T |
45270409 |
tgaatatgaatactggtattgttatccaggactgcaatatcatcccagaagcagcattggtccctgaaaaattcacagttaggtcttacttgggcagacc |
45270310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 45270575 - 45270466
Alignment:
| Q |
1 |
gttcaaagcaacaggcagtactaccgcaattgtcttgtctctggtaccgttgacttcatctttggatcatctgctaccttgatccaacactctacaatca |
100 |
Q |
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||||||| ||||||||| | ||||||||| ||| || |||| |||||| ||||||||||||||||| ||||||| |||||||||||| |||||| |||| |
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| T |
45270575 |
gttcaaaccaacaggcaattctaccgcaactgtgttatctccggtaccattgacttcatctttggaacatctgccaccttgatccaaagctctaccatca |
45270476 |
T |
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| Q |
101 |
ttgtaagaaa |
110 |
Q |
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| || ||||| |
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| T |
45270475 |
tcgtgagaaa |
45270466 |
T |
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