View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19651_low_24 (Length: 248)
Name: NF19651_low_24
Description: NF19651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19651_low_24 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 6139283 - 6139527
Alignment:
| Q |
1 |
cattaatttatgtccaatcatttgtagctcccacctttgttgaaatatgaaaataaatctttaacctgctctaagaatcataagtatgttgcatactagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6139283 |
cattaatttatgtccaatcatttgtagctcccacctttgttgaaatatgaaaataaatctttaacctgctctaagaatcataagtatgttgcatactagt |
6139382 |
T |
|
| Q |
101 |
tgagggtgtatacaacatagttgtaactgactcaacagttggttaatcactaagaagctaagctttctacattactctaacaaagtttaaacttgaaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6139383 |
tgagggtgtatacaacatagttgtaactgactcaacagttggttaatcactaagaagctaagctttctacattactctaacaaagtttaaacttgaaaaa |
6139482 |
T |
|
| Q |
201 |
c--agtgttctgttggctgtaatatgacattgttactattctctg |
243 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6139483 |
catagtgttctgttggctgtaatatgacattgttactattctctg |
6139527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 143 - 243
Target Start/End: Complemental strand, 13279414 - 13279314
Alignment:
| Q |
143 |
ttaatcactaagaagctaagctttctacattactctaacaaagtttaaacttgaaaaacagtgttctgttggctgtaatatgacattgttactattctct |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
13279414 |
ttaatcactaagaagctaagctttctacattactctaacaaagtttgaacttgaaaaacagtgttctgttggctgtaatcagacattgttactattctct |
13279315 |
T |
|
| Q |
243 |
g |
243 |
Q |
| |
|
| |
|
|
| T |
13279314 |
g |
13279314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 6165097 - 6165211
Alignment:
| Q |
1 |
cattaatttatgtccaatcatttgtagctcccacctttgttgaaatatgaaaataaatctttaacctgctctaagaatcataagtatgttgcatactagt |
100 |
Q |
| |
|
|||| ||||||||| ||| |||| |||||||||||||| |||||||||||||| ||||||||||||| |||| ||| |||||||||| |||||| || || |
|
|
| T |
6165097 |
cattcatttatgtcaaataatttttagctcccacctttattgaaatatgaaaacaaatctttaacctactctcagagtcataagtatattgcatgctggt |
6165196 |
T |
|
| Q |
101 |
tgagggtgtatacaa |
115 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
6165197 |
tgaaggtgtatacaa |
6165211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 13282815 - 13282730
Alignment:
| Q |
1 |
cattaatttatgtccaatcatttgtagctcccacctttgttgaaatatgaaaataaatctttaacctgctctaagaatcataagta |
86 |
Q |
| |
|
|||| |||| || |||||||||| ||||| ||||||||||||||||||||||||||| |||||||| |||| ||| ||||||||| |
|
|
| T |
13282815 |
cattcatttctgaccaatcatttttagctttcacctttgttgaaatatgaaaataaatatttaaccttctctcagagtcataagta |
13282730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 77
Target Start/End: Original strand, 6234331 - 6234373
Alignment:
| Q |
35 |
ctttgttgaaatatgaaaataaatctttaacctgctctaagaa |
77 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
6234331 |
ctttgttgaaatatgaaaataaatctttaagctgctctcagaa |
6234373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 6725860 - 6725827
Alignment:
| Q |
25 |
tagctcccacctttgttgaaatatgaaaataaat |
58 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
6725860 |
tagctcccacctttgttgaaatatgaaaataaat |
6725827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 145
Target Start/End: Complemental strand, 13282512 - 13282480
Alignment:
| Q |
113 |
caacatagttgtaactgactcaacagttggtta |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
13282512 |
caacatagttgtaactgactcaacagttggtta |
13282480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 6412574 - 6412531
Alignment:
| Q |
15 |
caatcatttgtagctcccacctttgttgaaatatgaaaataaat |
58 |
Q |
| |
|
|||| |||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
6412574 |
caataatttttagctcccaccttcgttgaaatatgaaaataaat |
6412531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 6858620 - 6858586
Alignment:
| Q |
25 |
tagctcccacctttgttgaaatatgaaaataaatc |
59 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |
|
|
| T |
6858620 |
tagctcccacctttgttgaaatatgaaaattaatc |
6858586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University