View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19651_low_25 (Length: 244)
Name: NF19651_low_25
Description: NF19651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19651_low_25 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 15261371 - 15261586
Alignment:
| Q |
19 |
agtcttaaaaaatccatgttagttagagtagttgaaagtagtggttgaatagttaagtgtacaatatttaattaaatgaggtaatcattggaaacaaatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
15261371 |
agtcttaaaaaatccatgttagttagagtagttgaaagtagtggttgaatagttaagtgtactatattcaattaaatgaggtaatcattggaaacaaatt |
15261470 |
T |
|
| Q |
119 |
agtaaatannnnnnnggtattttaaaatgacaaataattttaagatgagaattaaacaaacacttatagtgagaaaggtaatattttttaacaaatcacc |
218 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
15261471 |
agtaaatatttttttggtattttaaaatgacaaataattttaagatgagaattaaacaaacacttacagtgagaaaggtaatattttttaacaaatcacc |
15261570 |
T |
|
| Q |
219 |
acaattaaggcctttg |
234 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
15261571 |
acaattaaggcctttg |
15261586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University