View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19651_low_4 (Length: 673)
Name: NF19651_low_4
Description: NF19651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19651_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 572; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 17 - 656
Target Start/End: Complemental strand, 582054 - 581413
Alignment:
| Q |
17 |
atatgagaccttttttgttgtttccctttgttggcgtgcttgaatctcttgtgcgagtgttgcattattgaataatattttgccgattnnnnnnnnn--g |
114 |
Q |
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| T |
582054 |
atatgagaccttttttgttgtttccctttgttggcgtgcttgaatctcttgtgtgagtgttgcattattgaataatattttgccgattaaaaaagaaaag |
581955 |
T |
|
| Q |
115 |
ttttttattgaacaactattttgatggaaatatggcatgatagtagagatctcacattaatgaaacaggataagctaacattacaatgttatagatttta |
214 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
581954 |
tattttattgaacaactattttgatggaaatatggcatgatagtagagatctcacattaatgaaacagaataagctaacattacaatgttatagatttta |
581855 |
T |
|
| Q |
215 |
taaaatagatgttgccctatttcatttgattatttcaccttatactatcaagccaaatataccaaaaacaaactaaacatacatgcgacctaatgcaaat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
581854 |
taaaatagatgttgccctatttcatttgattatttcaccttatactatcaagccaaatataccaaaaacaaactaaacatacatgcgacctaatgcaaat |
581755 |
T |
|
| Q |
315 |
cactgtaatgtaagctaatccttcaaaggtggacttgcccacaaattctagcatactataataccacttgcttctgtaagctaatcatatgaaaagtcaa |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
581754 |
cactgtaatgtaagctaatccttcaaaggtggacttgcccacaaattctagcatactataataccacttgcttctgtaagctaatcatatgaaaattcaa |
581655 |
T |
|
| Q |
415 |
gaagatattcaggaatgaaattataaaatgattgcagcttttccttaatttcttccacaacctcgtctttgtccacgacttcactagcaatggagaagca |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
581654 |
gaagatattcaggaatgaaattataaaatgattgcagcttctccttaatttcttccacaacctcgtctttgtccacgacttggctagcaatggagaagca |
581555 |
T |
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| Q |
515 |
catcttctccaagaacttacaattatccaaaaaatatttagctaaagataactcaagatcctccccaataacttcttcaaatttcacaacatggagaaaa |
614 |
Q |
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| T |
581554 |
catcttctccaagaacttacaattatccaaaaaatatttagctaaagataactcaagatcctccccaataacttgttcaaatttcacaacatggagaaaa |
581455 |
T |
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| Q |
615 |
gccaaacgcttgggcacatcagcagaactcaaaagctcttcc |
656 |
Q |
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| T |
581454 |
gccaaacgcttgggcacatcagcagaactcaaaagctcttcc |
581413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 341 - 656
Target Start/End: Complemental strand, 1208085 - 1207773
Alignment:
| Q |
341 |
aggtggacttgcccacaaattctagcatactataataccacttgcttctgtaagctaatcatatgaaaagtcaagaagatattcaggaatgaaattataa |
440 |
Q |
| |
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|||||||||| || ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||| || || ||||||||||||||| | |
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| T |
1208085 |
aggtggacttacctacaaattctagcatactataataccacttgcttctgtaaactactcatatgaaaactcaacaacat---caggaatgaaattatga |
1207989 |
T |
|
| Q |
441 |
aatgattgcagcttttccttaatttcttccacaacctcgtctttgtccacgacttcactagcaatggagaagcacatcttctccaagaacttacaattat |
540 |
Q |
| |
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|| || || ||| ||||||| |||||||| |||||| ||||||||| || || |||| | | |||||| |||||| ||||||||| | ||| ||| | |
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| T |
1207988 |
aacgaggacatcttctccttaaattcttccataacctcatctttgtccgggatttgactaaccagggagaaacacatcctctccaagaccataccatttt |
1207889 |
T |
|
| Q |
541 |
ccaaaaaatatttagctaaagataactcaagatcctccccaataacttcttcaaatttcacaacatggagaaaagccaaacgcttgggcacatcagcaga |
640 |
Q |
| |
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||| ||| ||| ||||||| ||||||| |||| || ||| ||||||||||||||||||||||||||||| ||||||||| | ||| ||| ||| ||| |
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| T |
1207888 |
ccaccaaaaattgagctaaaattaactcatgatcatctccattaacttcttcaaatttcacaacatggagagaagccaaacattcgggaacaacagaaga |
1207789 |
T |
|
| Q |
641 |
actcaaaagctcttcc |
656 |
Q |
| |
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| |||||||||||||| |
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| T |
1207788 |
attcaaaagctcttcc |
1207773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 355 - 656
Target Start/End: Complemental strand, 1215332 - 1215034
Alignment:
| Q |
355 |
acaaattctagcatactataataccacttgcttctgtaagctaatcatatgaaaagtcaagaagatattcaggaatgaaattataaaatgattgcagctt |
454 |
Q |
| |
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||||||| | ||||||||| |||| |||| ||||||||| |||| |||||||||| |||| || || |||| ||||||||| |||||| || ||| |
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| T |
1215332 |
acaaatttttgcatactatgatactacttacttctgtaaactaagcatatgaaaattcaacaacatg---aggattgaaattatgaaatgaggacaactt |
1215236 |
T |
|
| Q |
455 |
ttccttaatttcttccacaacctcgtctttgtccacgacttcactagcaatggagaagcacatcttctccaagaacttacaattatccaaaaaatattta |
554 |
Q |
| |
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||||||| |||||||| |||||| ||||||||| || || |||||||| ||||| |||||||||||||||| | || ||| | || ||| ||||| |
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| T |
1215235 |
ctccttaaattcttccataacctcatctttgtccgggatttgactagcaagagagaaacacatcttctccaagatcataacatttttcacaaagaattta |
1215136 |
T |
|
| Q |
555 |
gctaaagataactcaagatcctccccaataacttcttcaaatttcacaacatggagaaaagccaaacgcttgggcacatcagcagaactcaaaagctctt |
654 |
Q |
| |
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|||||| ||| |||| ||| || ||| ||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||||||| |||| |
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| T |
1215135 |
gctaaaaatatctcatgattgtctccattaacttcttcaaatttcacaacatggagagaagccaaactaccgggcaccacggcagaactcaaaagttctt |
1215036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 497 - 656
Target Start/End: Complemental strand, 1201798 - 1201639
Alignment:
| Q |
497 |
actagcaatggagaagcacatcttctccaagaacttacaattatccaaaaaatatttagctaaagataactcaagatcctccccaataacttcttcaaat |
596 |
Q |
| |
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|||||||| |||||| ||||||||||||||| | | ||| | || |||| ||||||| ||| ||| ||| ||| || ||| ||||||||| |||| |
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| T |
1201798 |
actagcaagggagaaacacatcttctccaagctaatgccatttttcataaaaaatttagccaaaaatagatcatgattgtctccattaacttctttaaat |
1201699 |
T |
|
| Q |
597 |
ttcacaacatggagaaaagccaaacgcttgggcacatcagcagaactcaaaagctcttcc |
656 |
Q |
| |
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||||||||||||||| ||||||||| | ||||||| |||||||||| | | |||||||| |
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| T |
1201698 |
ttcacaacatggagagaagccaaacattcgggcacaacagcagaacttagacgctcttcc |
1201639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 545 - 643
Target Start/End: Original strand, 929202 - 929300
Alignment:
| Q |
545 |
aaaatatttagctaaagataactcaagatcctccccaataacttcttcaaatttcacaacatggagaaaagccaaacgcttgggcacatcagcagaact |
643 |
Q |
| |
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|||| ||||||| ||| ||| ||| |||| || ||||||||||||| |||||||||||||| |||| ||||||||| | ||||||| |||| ||||| |
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| T |
929202 |
aaaaaatttagccaaaaatagatcatgatcgtctccaataacttctttaaatttcacaacatagagagaagccaaacattcgggcacaacagccgaact |
929300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 104
Target Start/End: Complemental strand, 27074393 - 27074360
Alignment:
| Q |
71 |
gagtgttgcattattgaataatattttgccgatt |
104 |
Q |
| |
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||||||||| |||||||||||||||||||||||| |
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| T |
27074393 |
gagtgttgctttattgaataatattttgccgatt |
27074360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 5e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 507 - 656
Target Start/End: Original strand, 8188437 - 8188586
Alignment:
| Q |
507 |
gagaagcacatcttctccaagaacttacaattatccaaaaaatatttagctaaagataactcaagatcctccccaataacttcttcaaatttcacaacat |
606 |
Q |
| |
|
||||| ||||| ||||||||| | ||| ||| |||| |||| || |||||||| |||||||| |||| || | | ||| |||||||||||||||||||| |
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| T |
8188437 |
gagaaacacatactctccaagatcataccattttccataaaaaatgtagctaaaaataactcatgatcgtctctattaatttcttcaaatttcacaacat |
8188536 |
T |
|
| Q |
607 |
ggagaaaagccaaacgcttgggcacatcagcagaactcaaaagctcttcc |
656 |
Q |
| |
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||||| ||||||||| | ||||||| |||||||||||| |||||||||| |
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|
| T |
8188537 |
ggagagaagccaaacaatcgggcacaacagcagaactcagaagctcttcc |
8188586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 357 - 414
Target Start/End: Original strand, 8188296 - 8188353
Alignment:
| Q |
357 |
aaattctagcatactataataccacttgcttctgtaagctaatcatatgaaaagtcaa |
414 |
Q |
| |
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|||||||| ||||||||| |||||||||||||| ||| ||| ||||||||||| |||| |
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|
| T |
8188296 |
aaattctaccatactatattaccacttgcttctttaaactattcatatgaaaattcaa |
8188353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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