View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19651_low_8 (Length: 471)
Name: NF19651_low_8
Description: NF19651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19651_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 344; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 19 - 430
Target Start/End: Complemental strand, 5984590 - 5984188
Alignment:
| Q |
19 |
gtatgaccaaaaattaaccaaaatattctggatttcaannnnnnnagttcatcgaaaattgactatggtttcttttcaaataagatggacatggaatgag |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5984590 |
gtatgaccaaaaattaaccaaaatattctggatttcaattttt--agttcatcgaaaattgactatggtttcttttcaaataagatggacatggaatgag |
5984493 |
T |
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| Q |
119 |
actatgcttatgtactaagtagtcaaaagaccttaaccttcttcatgcaaatacataaccaacttataattacacaggtctattatgagctttgtagcac |
218 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5984492 |
actatgcttatggactaagtagtcaaaagaccttaaccttcttcatgcaaatacataaccaacttataattacacaggtctattatgagctttgtagcac |
5984393 |
T |
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| Q |
219 |
ctacacttctaattgaaggagtttccggtgtccgatatgtgcatgtgataaaattattaccgacgtgtcagtgtcgtgtccagtgtctgcctcaatgctt |
318 |
Q |
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| T |
5984392 |
ctacacttctaattgaaggagttgccggtgtccgatatatgcatgtgataaaattattaccgacgtgtcagtgtcgtgtccagtgtctgcctcaatgctt |
5984293 |
T |
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| Q |
319 |
catagatcatgagtaataaaaacattaaaacagtgcaaccaggttctaaggaaaaggtttcaaagattttcttaccattaaagtgacagatgtatgcagt |
418 |
Q |
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| T |
5984292 |
catagatcatgagtaataaaaacattaaaacagcgcaaccaggttctaaggaaa-------aaagattttcttaccattaaagtgacagatgtatgcagt |
5984200 |
T |
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| Q |
419 |
catcagcacagg |
430 |
Q |
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| T |
5984199 |
catcagcacagg |
5984188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 90 - 200
Target Start/End: Complemental strand, 5968321 - 5968211
Alignment:
| Q |
90 |
cttttcaaataagatggacatggaatgagactatgcttatgtactaagtagtcaaaagaccttaaccttcttcatgcaaatacataaccaacttataatt |
189 |
Q |
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| T |
5968321 |
cttttcagattagttggacatagaatgaggtgatgcttatggaataagtagtcagaagaccttaatcttcttcatgcaaatccataaccaacttataatt |
5968222 |
T |
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| Q |
190 |
acacaggtcta |
200 |
Q |
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| ||| ||||| |
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| T |
5968221 |
atacaagtcta |
5968211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 83 - 176
Target Start/End: Complemental strand, 5963326 - 5963233
Alignment:
| Q |
83 |
atggtttcttttcaaataagatggacatggaatgagactatgcttatgtactaagtagtcaaaagaccttaaccttcttcatgcaaatacataa |
176 |
Q |
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| T |
5963326 |
atggtttctttgcaaattagttggaaatggaatgaagtgatggttttggaataagtagtcagaagacctcaaccttcttcatgcaaatccataa |
5963233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 28503107 - 28503151
Alignment:
| Q |
209 |
tttgtagcacctacacttctaattgaaggagtttccggtgtccga |
253 |
Q |
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| T |
28503107 |
tttgtagcaccaatacttctaattgaaggtgtgtccggtgtccga |
28503151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 29815512 - 29815556
Alignment:
| Q |
209 |
tttgtagcacctacacttctaattgaaggagtttccggtgtccga |
253 |
Q |
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||||||||||| | ||||||||||||||| || |||||||||||| |
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| T |
29815512 |
tttgtagcaccaatacttctaattgaaggtgtgtccggtgtccga |
29815556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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