View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19652_high_1 (Length: 300)
Name: NF19652_high_1
Description: NF19652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19652_high_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 42 - 258
Target Start/End: Complemental strand, 18346358 - 18346143
Alignment:
| Q |
42 |
caaattcatcacacatgaattcggatttaattttct--ctccagattatggnnnnnnnncttttcaaaatctatttctcatagattagatttcaaaacac |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
18346358 |
caaattcatcacacatgaattcggatttaattttttttctccagattatggtttttt---ttttcgaaatctatttctcatagattagatttcaaaacac |
18346262 |
T |
|
| Q |
140 |
gnnnnnnnnccttcttttcttccttgggttcatcgtttccccatatcaaaacacaaacaacaacaatcatttcttctatatattcaaaatcagtatgttg |
239 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
18346261 |
gtttttttttcttcttttcttccttgggttcatcgtttccccatatcaaaacacaaacaacaacaatcatttcttctatatattcaaaatcattatgttg |
18346162 |
T |
|
| Q |
240 |
atgaaccattcgtttcttc |
258 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
18346161 |
gtgaaccattcgtttcttc |
18346143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 42 - 258
Target Start/End: Original strand, 49802125 - 49802342
Alignment:
| Q |
42 |
caaattcatcacacatgaattcggatttaat--tttctctccagattatggnnnnnnnncttttcaaaatctatttctcatagattagatttcaaaacac |
139 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
49802125 |
caaattcatcacacatgaatttggatttaatcttttctctccagattatggtttt-----ttttcgaaatctatttctcatagattagatttcaaaacac |
49802219 |
T |
|
| Q |
140 |
gnnnnnnnncc----ttcttttcttccttgggttcatcgtttccccatatcaaaacacaaacaacaacaatcatttcttctatatattcaaaatcagtat |
235 |
Q |
| |
|
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
49802220 |
gtttttttttccttcttcttttcttccttgggttcatcgtttccccatatcaaaacacaaacaacaacaatcatttcttctatatattcaaaatcattat |
49802319 |
T |
|
| Q |
236 |
gttgatgaaccattcgtttcttc |
258 |
Q |
| |
|
|||| |||||||||||||||||| |
|
|
| T |
49802320 |
gttggtgaaccattcgtttcttc |
49802342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 42 - 254
Target Start/End: Original strand, 26886772 - 26886991
Alignment:
| Q |
42 |
caaattcatcacacatgaattcggatttaatt---ttctctccagattatggnnnnnnnncttttcaaaatctatttctcatagattagatttcaaaaca |
138 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
26886772 |
caaattcatcacacatgaattcagatttaattcttttctctccaaattatggtttttttttttttcaaaatccatttctcatagattagatttcaaaaca |
26886871 |
T |
|
| Q |
139 |
cgnnnnnnnnc----cttcttttcttccttgggttcatcgtttccccatatcaaaacacaaacaacaacaatcatttcttctatatattcaaaatcagta |
234 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
26886872 |
cgttttctttttcttcttcttttcttccttgggttcatcgtttccccatatcaaaacacaaacaacaacattcatttcttctatatattcgaaatcagta |
26886971 |
T |
|
| Q |
235 |
tgttgatgaaccattcgttt |
254 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
26886972 |
tgttggtgaaccattcgttt |
26886991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 42 - 258
Target Start/End: Original strand, 22538068 - 22538294
Alignment:
| Q |
42 |
caaattcatcacacatgaattcggatttaatt---ttctctccagattatggnnnnnnnn---cttttcaaaatctatttctcatagattagatttcaaa |
135 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
22538068 |
caaattcatcacacatgaattcagatttaattcttttctctccagattatggtttttttttttcttttcgaaatccatttctcatagattagatttcaaa |
22538167 |
T |
|
| Q |
136 |
acacgnnnnnnnnc----cttcttttcttccttgggttcatcgtttccccatatcaaaacacaaacaacaacaatcatttcttctatatattcaaaatca |
231 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
22538168 |
acacgtttttttcttcttcttcttttcttccttgggttcatcgtttccccatatcaaaacacaaacaacaacattcatttcttctatatattcgaaatca |
22538267 |
T |
|
| Q |
232 |
gtatgttgatgaaccattcgtttcttc |
258 |
Q |
| |
|
|||||||| |||||||||||||||||| |
|
|
| T |
22538268 |
gtatgttggtgaaccattcgtttcttc |
22538294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University