View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19652_high_3 (Length: 324)
Name: NF19652_high_3
Description: NF19652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19652_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 17855373 - 17855683
Alignment:
| Q |
1 |
tcgcgtggtattagttagacatacaggtgacttatttgaaaagttatctagtatctacatttataatctattcagttagattaaggcttagtttacattt |
100 |
Q |
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| T |
17855373 |
tcgcgtggtattagttagacatacaggtgacttatttgaaaagctatctagtatctacatttataatctattcagttagattaaggcttagtttacattt |
17855472 |
T |
|
| Q |
101 |
tgatcatcataatcagaaacaggtccacttgttgctttgtctgcgtttaataaaagcattttccttgtcacactaagatgtagacatctctgtagttgtg |
200 |
Q |
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| T |
17855473 |
tgatcatcataatcagaaacaggtccacttgttgctttgtctgggtttaataaaagcattttccttgtcacactaagatgtagacatctctgtaattgtg |
17855572 |
T |
|
| Q |
201 |
ttctggttccagttctagtgtcaataacattatttattactctaagaatatatatcatccataatatagacggcaatgctgaaatcctactggaccatca |
300 |
Q |
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|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17855573 |
ttctggttccagctcttgtgtcaataacattatttattactctaagaatatatatcatccataatatagacggcaatgctgaaatcctactggaccatca |
17855672 |
T |
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| Q |
301 |
tatctcgttca |
311 |
Q |
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||||||||||| |
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| T |
17855673 |
tatctcgttca |
17855683 |
T |
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