View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19652_high_4 (Length: 305)
Name: NF19652_high_4
Description: NF19652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19652_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 44467244 - 44467540
Alignment:
| Q |
1 |
actgtatcgaaaaatgaatgcatctcatcataattatcttcaacaactccttgttggacagatgatagtggctgcgactctgaggtaaccaatttatgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44467244 |
actgtatcgaaaaatgaatgcatctcatcataattatcttcaacaactccttgttggacagatgatagtggctgcgactctgaggtaaccaatttatgag |
44467343 |
T |
|
| Q |
101 |
gttgcattgctattgaactgctattattatttgtgtaagggcactgaagccacaaattaggatttgtagcatcatcctttgaatccatgtagagggagga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
44467344 |
gttgcattgctattgaactgctattattatttgtgtaagggcactgaagccacaaattaggatttgtagcatcatcttttgaatccatgtagagggagga |
44467443 |
T |
|
| Q |
201 |
gttattataatccacactattgctgttggagtaggaatgttgctgagatatagacaaagatgcagcaactgtgttattgttgttataagtctgtggt |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44467444 |
gttattataatccacactattgctgttggagtaggaatgttgctgagatacagacaaagatgcagcaactgtgttattgttgttataagtctgtggt |
44467540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University