View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19653_high_3 (Length: 412)
Name: NF19653_high_3
Description: NF19653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19653_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 15 - 188
Target Start/End: Original strand, 35607133 - 35607312
Alignment:
| Q |
15 |
attcttgattattattaaagttgaattagtgccgaaaaatttagaaagaaaacatatgaaattttctctaattacatcaataaatttagtg------aaa |
108 |
Q |
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| T |
35607133 |
attcttgactattattaaagttgaattagtgccgaaaaatttagaaagaaaacatatgaaattttctctaattgcatcaataaatttagtgaaaaaaaaa |
35607232 |
T |
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| Q |
109 |
ataaaaaagtttgattgcagcttgtgtttcccttttaaaatataatttttggttctttgctcaatttttaaaccacacac |
188 |
Q |
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| T |
35607233 |
aaaaaaaagtttgattgcagcttgtgtttcccttttaaaatataatttttggttctttgctcaatttttaaaccacacac |
35607312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 249 - 394
Target Start/End: Original strand, 35607373 - 35607518
Alignment:
| Q |
249 |
ttctcacttgatgatgaattaaaatgttacttgtggtgaccattnnnnnnngggaaatgttacctgtgccctgtcgaatttaagacccatttatttaatt |
348 |
Q |
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| T |
35607373 |
ttctcacttgatgatgaattaaaatgttacttgtggtgaccattaaaaaaagggaaatgttacttgtgccctgtcggatttaagacccatttgtttaatt |
35607472 |
T |
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| Q |
349 |
tagaacttccatactaatattatttcttaaaatttgttcactatgc |
394 |
Q |
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| T |
35607473 |
tagaacttacatactaatattatttcttaaaatttgttcactatgc |
35607518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 42964233 - 42964181
Alignment:
| Q |
50 |
aaaatttagaaagaaaacatatgaaattttctctaattacatcaataaattta |
102 |
Q |
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| T |
42964233 |
aaaatttagaaagaaaaaatatgaaattttctttaactgcatcactaaattta |
42964181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 393
Target Start/End: Complemental strand, 42962236 - 42962206
Alignment:
| Q |
363 |
taatattatttcttaaaatttgttcactatg |
393 |
Q |
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| T |
42962236 |
taatattatttcttaaaatttgttcactatg |
42962206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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