View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19653_high_4 (Length: 283)
Name: NF19653_high_4
Description: NF19653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19653_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 265
Target Start/End: Complemental strand, 49686952 - 49686703
Alignment:
| Q |
16 |
atgaagatttgaaattaaaggtaatttcatcagctaacaatcgaaatgggttaccagaaagtgcaaaacctaatttaatgacaggaagatgaaacggaaa |
115 |
Q |
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| T |
49686952 |
atgaagatttgaaattaaaggtaatttcatcagctaacaatcgaaatgggttaccagaaagtgcaaaacctaatttaatgacaggaagatgaaacggaaa |
49686853 |
T |
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| Q |
116 |
acaggacgtgaaagagtggttggactcatcattagatattgttgaatcaccgaagtaaaaatcatagcgaggacatgtactatttttgaagaaattattt |
215 |
Q |
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| T |
49686852 |
acaggacgtgaaagagtggttgggctcatcattagatattgttgaatcaccgaagtaaaaatcatagcgaggacatgtactatttttgaagaaattattt |
49686753 |
T |
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| Q |
216 |
ggtgggttgctggctaatttttgggtatggctgcatttgaaagctgttat |
265 |
Q |
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| T |
49686752 |
ggtgggttgctggctaatttttgggtatggctgcatttgaaagctgttat |
49686703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 16 - 265
Target Start/End: Complemental strand, 49691218 - 49690972
Alignment:
| Q |
16 |
atgaagatttgaaattaaaggtaatttcatcagctaacaatcgaaatgggttaccagaaagtgcaaaacctaatttaatgacaggaagatgaaacggaaa |
115 |
Q |
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| T |
49691218 |
atgaagattggaactgaaaggtaatttcattagttaaaaagggaaatgggttaccggaaagtgcaaagcctaattcattgacaggaagatgcaatgacga |
49691119 |
T |
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| Q |
116 |
acaggacgtgaaagagtggttggactcatcattagatattgttgaatcaccgaagtaaaaatcatagcgaggacatgtactatttttgaagaaattattt |
215 |
Q |
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| T |
49691118 |
acaggacacgaaagagtggttggactcatcatcaaatattg---aatcgccaaagtaaaaatcatagggatgacaagaactatttatgaagaaattactt |
49691022 |
T |
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| Q |
216 |
ggtgggttgctggctaatttttgggtatggctgcatttgaaagctgttat |
265 |
Q |
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| T |
49691021 |
ggagggtgaatgcctaattttcgggtatggttgcatttgaaagctgttat |
49690972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 265
Target Start/End: Complemental strand, 49679584 - 49679338
Alignment:
| Q |
16 |
atgaagatttgaaattaaaggtaatttcatcagctaacaatcgaaatgggttaccagaaagtgcaaaacctaatttaatgacaggaagatgaaacggaaa |
115 |
Q |
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|||||| |||||| | |||||| |||| |||| |||| ||| ||||||| || || ||||||||||| ||||||| | ||||||||||||| || | | |
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| T |
49679584 |
atgaaggtttgaactgaaaggttatttgatcatctaagaatggaaatggattgccggaaagtgcaaagcctaattcattgacaggaagatgcaatgacga |
49679485 |
T |
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| Q |
116 |
acaggacgtgaaagagtggttggactcatcattagatattgttgaatcaccgaagtaaaaatcatagcgaggacatgtactatttttgaagaaattattt |
215 |
Q |
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||||||| ||||||||||||||||||||||| | |||||| |||| || ||||||||||||||| || |||| | ||||||| ||||||||||| || |
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| T |
49679484 |
acaggacacgaaagagtggttggactcatcatcaaatattg---aatcgccaaagtaaaaatcatagggatgacaagaactatttctgaagaaattactt |
49679388 |
T |
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| Q |
216 |
ggtgggttgctggctaatttttgggtatggctgcatttgaaagctgttat |
265 |
Q |
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|| || | | || |||||||| ||||| || ||||||||||||||||||| |
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| T |
49679387 |
ggaggttggatgcctaattttcgggtacggttgcatttgaaagctgttat |
49679338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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