View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19653_low_1 (Length: 729)
Name: NF19653_low_1
Description: NF19653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19653_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 550; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 14 - 674
Target Start/End: Complemental strand, 9137727 - 9137069
Alignment:
| Q |
14 |
aatatgtgatctcagaaccattctcagatttgctttgttaatttatttctacttgttagtgtttttgatgctatttactttttctactgaagtcatatct |
113 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||| | |
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| T |
9137727 |
aatatgtgatctcagaaccattctcagatttgctttgttaatttacttctacttgttagtgtttttgatgctattt--tttacttactgaagtcatatat |
9137630 |
T |
|
| Q |
114 |
ctgttatctctataactaattatgactaatagaaaattgtaacatatatctgtcagaaaatttacacctacttcgttcttttaattcttttcttttgtaa |
213 |
Q |
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|| | |||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9137629 |
ctctcatctctataactaattatgactaatagaaaattgtaactaatatcattgagaaaatttacacctacttcgttcttttaattcttttcttttgtaa |
9137530 |
T |
|
| Q |
214 |
atttataatttgcaatctcaatttacattgtgagtgcatggcatcgtgatgggtcaatcgtaaactatatagtatgtgtgtgagtatattttggttgaaa |
313 |
Q |
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||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
9137529 |
atttataatttaaattctcaatttacattgtgagtgcatggcatcgtgatggctcaatcgtaaactatatagtatgtgtgtgagtatatttttgttgaaa |
9137430 |
T |
|
| Q |
314 |
ctcgaaagaaataggaatatagattctcttatttggcttgttaaagaaatttcttctcgatcaacaaccaaaggatattcttgtaaaattttctccaagt |
413 |
Q |
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| T |
9137429 |
ctcgaaagaaataggaatatagattctctcatttggcttgttaaagaagtttcttctcgatcaacaaccaaaggatattcttgtaaaattttctccaagt |
9137330 |
T |
|
| Q |
414 |
tttgtcttgaccagaaagccaaaacgatgtaggcaatggtctcgcaggtcattggatgaacgccgccatcagcccaccatatctaactccgcatctgatg |
513 |
Q |
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| T |
9137329 |
tttgtcttgaccagaaagccataacgatgtgggcaatggtctcgcaggtcattggatgaacaccgccatcagcccaccatatctaactccgcatctgatg |
9137230 |
T |
|
| Q |
514 |
ttagaaagattagattcccaaattgcacggaagatcagatgcactcaatctaaagatatgtcgcgaacaagtcaaagattttaaacatatgccaggctga |
613 |
Q |
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| T |
9137229 |
taagaaagattagattcccaaattgcacggaagatcagatgcactcaatctaaacatatgtcgcgaacaagtcaaggattttaaacatatgccaggctga |
9137130 |
T |
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| Q |
614 |
agggtttcgatttgcaaataaatcagaaaaattcagcagttgaattatcgctcgctccaca |
674 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9137129 |
agggtttcgatttgcaaataaatcagaaaaattcagcagttgaattatcgctcgctccaca |
9137069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 119 - 222
Target Start/End: Complemental strand, 8040412 - 8040306
Alignment:
| Q |
119 |
atctctataactaattatgactaatagaaaa-ttgtaacatatatctgtcagaaaatttacacctacttcgttcttttaattcttttcttttgta--aat |
215 |
Q |
| |
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|||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||| ||| |
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| T |
8040412 |
atctctctaactaattatgactaatagaaaaattgtaacatatatctgtgtgaaaatttacacctacttctttcttttaattctttacttttgtagtaat |
8040313 |
T |
|
| Q |
216 |
ttataat |
222 |
Q |
| |
|
||||||| |
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|
| T |
8040312 |
ttataat |
8040306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 572 - 661
Target Start/End: Complemental strand, 8040140 - 8040051
Alignment:
| Q |
572 |
tgtcgcgaacaagtcaaagattttaaacatatgccaggctgaagggtttcgatttgcaaataaatcagaaaaattcagcagttgaattat |
661 |
Q |
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|||| ||||||||| || |||||||||||||| |||||||||| || ||| ||||||||| |||||| |||| |||||||||||||||| |
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| T |
8040140 |
tgtctcgaacaagttaaggattttaaacatataccaggctgaatggcttcaatttgcaaacgaatcagcaaaaatcagcagttgaattat |
8040051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 579 - 657
Target Start/End: Complemental strand, 8034766 - 8034688
Alignment:
| Q |
579 |
aacaagtcaaagattttaaacatatgccaggctgaagggtttcgatttgcaaataaatcagaaaaattcagcagttgaa |
657 |
Q |
| |
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||||||| || |||| |||||||| ||||||||||| | ||| ||| ||||| |||||| ||||||||||||||||| |
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| T |
8034766 |
aacaagttaaggattctaaacataggccaggctgaatgacttcaattagcaaacgaatcagcaaaattcagcagttgaa |
8034688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 572 - 666
Target Start/End: Complemental strand, 31402503 - 31402409
Alignment:
| Q |
572 |
tgtcgcgaacaagtcaaagattttaaacatatgccaggctgaagggtttcgatttgcaaataaatcagaaaaattcagcagttgaattatcgctc |
666 |
Q |
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|||| ||||||||| | ||||||||||||| |||| | ||||||| ||||||||||||| |||||| ||||||||| |||||||||||||||| |
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| T |
31402503 |
tgtctcgaacaagttgaggattttaaacatacgccatggtgaagggcttcgatttgcaaacgaatcagcaaaattcagaagttgaattatcgctc |
31402409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 393 - 537
Target Start/End: Complemental strand, 31402756 - 31402613
Alignment:
| Q |
393 |
cttgtaaaattttctccaagttttgtcttgaccagaaagccaaaacgatgtaggcaatggtctcgcaggtcattggatgaacgccgccatcagcccacca |
492 |
Q |
| |
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|||||||||||||||||| |||||||||||||| |||||| |||||| || | ||| ||| || ||||||||||| || || ||||||||||| || |
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| T |
31402756 |
cttgtaaaattttctccagattttgtcttgaccaaaaagccgcgacgatggagctagtggcctcacatgtcattggatgtactccaccatcagcccaaca |
31402657 |
T |
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| Q |
493 |
tatctaactccgcatctgatgttagaaagattagattcccaaatt |
537 |
Q |
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| T |
31402656 |
-atctaactccacatatggtgtaagaaagatcatattcccaaatt |
31402613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 120 - 265
Target Start/End: Complemental strand, 31326473 - 31326331
Alignment:
| Q |
120 |
tctctataactaattatgactaatag-aaaattgtaacatatatctgtcagaaaatttacacctacttcgttcttttaattcttttcttttgtaaattta |
218 |
Q |
| |
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|||| ||||||||| ||||||||||| ||||||||| | |||||||| || ||||||||||||||||| ||||||| | | |||||||| ||| || | |
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| T |
31326473 |
tctcaataactaatcatgactaatagaaaaattgta--aaatatctgtgag-aaatttacacctacttctttcttttta-tattttctttcataacttca |
31326378 |
T |
|
| Q |
219 |
taatttgcaatctcaatttacattgtgagtgcatggcatcgtgatgg |
265 |
Q |
| |
|
|||||| ||| || |||||||||| || |||||||||| |||||| |
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| T |
31326377 |
taatttataatgtcgatttacattgcaagggcatggcatcttgatgg |
31326331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 265
Target Start/End: Complemental strand, 31373922 - 31373780
Alignment:
| Q |
120 |
tctctataactaattatgactaatagaaaa-ttgtaacatatatctgtcagaaaatttacacctacttcgttcttttaattcttttcttttgtaaattta |
218 |
Q |
| |
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|||| |||||||| ||||||||||||||| |||||| |||| |||| ||||| |||||||||||||| ||||||| | | |||||||| ||| || | |
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| T |
31373922 |
tctcaataactaaacatgactaatagaaaaattgtaaaatat--ctgtgagaaa-tttacacctacttctttcttttta-tattttctttcataacttca |
31373827 |
T |
|
| Q |
219 |
taatttgcaatctcaatttacattgtgagtgcatggcatcgtgatgg |
265 |
Q |
| |
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|||||| ||| || |||||||||| || |||||||||| |||||| |
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|
| T |
31373826 |
taatttataatgtcgatttacattgcaagggcatggcatcttgatgg |
31373780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 403 - 484
Target Start/End: Complemental strand, 31459205 - 31459124
Alignment:
| Q |
403 |
tttctccaagttttgtcttgaccagaaagccaaaacgatgtaggcaatggtctcgcaggtcattggatgaacgccgccatca |
484 |
Q |
| |
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|||||| | ||||||||||||||| ||||||| | |||||| ||||||| ||||| || ||||||||||| || |||||| |
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|
| T |
31459205 |
tttctctaggttttgtcttgaccaaaaagccatagtgatgtaatcaatggtatcgcaagtaattggatgaaccccaccatca |
31459124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 623 - 662
Target Start/End: Original strand, 5478645 - 5478684
Alignment:
| Q |
623 |
atttgcaaataaatcagaaaaattcagcagttgaattatc |
662 |
Q |
| |
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|||||||||| |||||||||| |||||||||||||||||| |
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|
| T |
5478645 |
atttgcaaatgaatcagaaaacttcagcagttgaattatc |
5478684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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