View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19653_low_2 (Length: 499)
Name: NF19653_low_2
Description: NF19653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19653_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 21 - 494
Target Start/End: Original strand, 20802082 - 20802553
Alignment:
| Q |
21 |
aatgatattaaagaaagagttaccaatcaaatcagcagcattcttgccattgcaaaacctcccagcaggtttcttagttggaaaatcaataccatagtat |
120 |
Q |
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| T |
20802082 |
aatgatattaaagaaagagttaccaatcaaatcagcagcattcttgccattgcaaaatctcccagcaggtttcttagttggaaaatcaataccatagtaa |
20802181 |
T |
|
| Q |
121 |
ggaaaaatagcttttgcaaaggtatcattcaagtaattattgtttccaacatcaacaagtgagtcaccaaacacataaacagcaggaaccttttgagctt |
220 |
Q |
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| T |
20802182 |
ggaaaaatagcttttgcaaaggtatcattcaagtaattattgtttccaacatcaacaagtgagtcaccaaacacataaacagcaggaaccttttgagctt |
20802281 |
T |
|
| Q |
221 |
ctaagaatcctaaatttaagatgaagaaagagattaagagaaatgaagttctcaatctcatcatacctaagttgtctgttttgtaatgagtatactatga |
320 |
Q |
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|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20802282 |
ctaagaatcctaaacttaagatgaagaaagagataaagagaaatgaagttctcaatctcatcatacctaagttgtctgttttgtaatgagtatactatga |
20802381 |
T |
|
| Q |
321 |
tttgatttgtgnnnnnnnnnnnnngtctttgtagtgtgtagtagtggttgaaaagagtcggttagagatttaattgaatttatgtgaaagataggtgggg |
420 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20802382 |
tttgatttgtg--tttttttttttgtctttgtagtgtgtagtagtggttgaaaagagtcggttagagatttaattgaatttatgtgaaagataggtgggg |
20802479 |
T |
|
| Q |
421 |
aaaagaattttgcttgctaagtagttaaagatagtggagccaaatgtactctctagatagtattatctacccac |
494 |
Q |
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| T |
20802480 |
aaaagaattttgcttgctaagtagttaaagatagtggagccaagggtactctctagatattattatcaacccac |
20802553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 40 - 233
Target Start/End: Original strand, 20753535 - 20753728
Alignment:
| Q |
40 |
ttaccaatcaaatcagcagcattcttgccattgcaaaacctcccagcaggtttcttagttggaaaatcaataccatagtatggaaaaatagcttttgcaa |
139 |
Q |
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||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| |||| ||| || ||| ||| |
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| T |
20753535 |
ttaccaatcaaatcagcagcatttttgccattgctaaacctcccagttggtttcttagttggaaaatcaatgccatagtaaggaagaattgcctttacaa |
20753634 |
T |
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| Q |
140 |
aggtatcattcaagtaattattgtttccaacatcaacaagtgagtcaccaaacacataaacagcaggaaccttttgagcttctaagaatcctaa |
233 |
Q |
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| T |
20753635 |
gagaaagagtcaagtgattattgttgccaacatcaacaagtgaatctccaaacacataaatagctggagtcttttgagcttctaagaatcctaa |
20753728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 40 - 233
Target Start/End: Original strand, 20759223 - 20759416
Alignment:
| Q |
40 |
ttaccaatcaaatcagcagcattcttgccattgcaaaacctcccagcaggtttcttagttggaaaatcaataccatagtatggaaaaatagcttttgcaa |
139 |
Q |
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||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||| | | |||||| ||| |
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| T |
20759223 |
ttaccaatcaaatcagcagcatttttgccattgctaaacctcccagttggtttcttagttggaaaatcaatgccatagtgaggaagagttgcttttacaa |
20759322 |
T |
|
| Q |
140 |
aggtatcattcaagtaattattgtttccaacatcaacaagtgagtcaccaaacacataaacagcaggaaccttttgagcttctaagaatcctaa |
233 |
Q |
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| T |
20759323 |
gggaaagagtcaagtaattgttattgccaacatcaacaagtgagtctccaaacacataaatagctggagtcttttgagcttttaagaaccctaa |
20759416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 41 - 218
Target Start/End: Complemental strand, 40638741 - 40638564
Alignment:
| Q |
41 |
taccaatcaaatcagcagcattcttgccattgcaaaacctcccagcaggtttcttagttggaaaatcaataccatagtatggaaaaatagcttttgcaa- |
139 |
Q |
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||||||| |||||||||||||| |||||||||| ||| ||||||| ||||| | | | |||||||||||||||||| || | | || || |||| |
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| T |
40638741 |
taccaataaaatcagcagcatttttgccattgctaaatctcccagttggtttgtgattaagaaaatcaataccatagtgacgatgatttgccttggcaat |
40638642 |
T |
|
| Q |
140 |
aggtatcattcaagtaattattgtttccaacatcaacaagtgagtcaccaaacacataaacagcaggaaccttttgagc |
218 |
Q |
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| T |
40638641 |
agatag-agtcaagtaattattgtttccaacatctacaagtgagtctccaaaaacataaacagctggaaccatttgagc |
40638564 |
T |
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