View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19654_high_10 (Length: 354)
Name: NF19654_high_10
Description: NF19654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19654_high_10 |
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| [»] scaffold0016 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 24 - 347
Target Start/End: Complemental strand, 33664319 - 33663999
Alignment:
| Q |
24 |
ctcctatcacaaacacaaaccatatcacaaaccaatcacatacgttcacacattctcattctctctctcaacaaaacnnnnnnnncactcacaaactcat |
123 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
33664319 |
ctcctatcacaaacacaaaccatatcacaatccaattacacacgttcacacattctcattctctctctcaacaaaacaaaaa---cactcacaaacttat |
33664223 |
T |
|
| Q |
124 |
caaaccgttacaacaatggaaattgaaacaaaccaagcaatggtagttacaaagaaagtatggaacacactacgtataattttgttcatgtttacaaaaa |
223 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33664222 |
caaaccgttacaacaatggaaattgaaacaaaccaaacaatggtagttacaaagaaagtatggaacacactacgtataattttcttcatgtttacaaaaa |
33664123 |
T |
|
| Q |
224 |
acattgccaaaagcaaaatggtagcagaattaaatctcttgttaaaacgtagcaaactcgccgccatcaaagccatagccaacactctagctctccgcca |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33664122 |
acattgccaaaagcaaaatggtagcagaattaaatctcttgttaaaacgtagcaaactcgccgccatcaaagccatagccaacactctagctctccgcca |
33664023 |
T |
|
| Q |
324 |
ccactcgactacctccttcatctc |
347 |
Q |
| |
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|||||||||| |||||||| |||| |
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| T |
33664022 |
ccactcgactgcctccttcgtctc |
33663999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 24 - 347
Target Start/End: Complemental strand, 33686121 - 33685789
Alignment:
| Q |
24 |
ctcctatcacaaacacaaaccatatcacaaaccaatcacatacgttcacacattctcattctctctctcaa-------caaaacnnnnnnnn--cactca |
114 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||| |||||| |||||| |
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| T |
33686121 |
ctcctatcacaaacacaaaccatatcacaatccaatcacatacgttcacctattctcattctttctctcaagtctctacaaaacaaaaaaaaaacactca |
33686022 |
T |
|
| Q |
115 |
caaactcatcaaaccgttacaacaatggaaattgaaacaaaccaagcaatggtagttacaaagaaagtatggaacacactacgtataattttgttcatgt |
214 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33686021 |
caaactcatcaaaccgttacaacaatggaaattgaaacaaaccaagcaatggtagttacaaagaaagtatggaacacactacgtataattttgttcatgt |
33685922 |
T |
|
| Q |
215 |
ttacaaaaaacattgccaaaagcaaaatggtagcagaattaaatctcttgttaaaacgtagcaaactcgccgccatcaaagccatagccaacactctagc |
314 |
Q |
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||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33685921 |
ttacaaaaaacatagccaaaagcaaaatggtagcacaattaaatctcttgttaaaacgtagcaaactcgccgccatcaaagccatagccaacactctagc |
33685822 |
T |
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| Q |
315 |
tctccgccaccactcgactacctccttcatctc |
347 |
Q |
| |
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||||||||||||||||||| |||||||| |||| |
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| T |
33685821 |
tctccgccaccactcgactgcctccttcgtctc |
33685789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 24 - 349
Target Start/End: Complemental strand, 33674931 - 33674597
Alignment:
| Q |
24 |
ctcctatcacaaacacaaaccatatcacaaaccaatcacatacgttcacacattctcattctctctctcaa-------caaaacnnnnnnnn--cactca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||| |||||| |||||| |
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| T |
33674931 |
ctcctatcacaaacacaaaccatatcacaatccaatcacatacgttcacctattctcattctttctctcaagtctctacaaaacaaaaaaaaaacactca |
33674832 |
T |
|
| Q |
115 |
caaactcatcaaaccgttacaacaatggaaattgaaacaaaccaagcaatggtagttacaaagaaagtatggaacacactacgtataattttgttcatgt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33674831 |
caaactcatcaaaccgttacaacaatggaaattgaaacaaaccaagcaatggtagttacaaagaaagtatggaacacactacgtataattttgttcatgt |
33674732 |
T |
|
| Q |
215 |
ttacaaaaaacattgccaaaagcaaaatggtagcagaattaaatctcttgttaaaacgtagcaaactcgccgccatcaaagccatagccaacactctagc |
314 |
Q |
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||||||||||||| ||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
33674731 |
ttacaaaaaacatagccaaaagcaaaatggtagcacaatttaatctcttgctaaaacgtagcaaactcgccgccatcaaagctatagccaacactctcac |
33674632 |
T |
|
| Q |
315 |
tctccgccaccactcgactacctccttcatctcac |
349 |
Q |
| |
|
|||||||||||||||| || |||||||| |||||| |
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| T |
33674631 |
tctccgccaccactcgtcttcctccttcgtctcac |
33674597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 138 - 330
Target Start/End: Complemental strand, 33693225 - 33693033
Alignment:
| Q |
138 |
aatggaaattgaaacaaaccaagcaatggtagttacaaagaaagtatggaacacactacgtataattttgttcatgtttacaaaaaacattgccaaaagc |
237 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33693225 |
aatggatattgaaacaaaccaagcaatggtagttacaaagaaagtatggaacacactacgtataattttgttcatgtttacaaaaaacattgccaaaagc |
33693126 |
T |
|
| Q |
238 |
aaaatggtagcagaattaaatctcttgttaaaacgtagcaaactcgccgccatcaaagccatagccaacactctagctctccgccaccactcg |
330 |
Q |
| |
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|||||||||||| |||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33693125 |
aaaatggtagcacaattaaatctcttgctaaaacgtggcaaactcgccgctatcaaagccatagccaacactctcactctccgccaccactcg |
33693033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 24 - 327
Target Start/End: Original strand, 103112 - 103411
Alignment:
| Q |
24 |
ctcctatcacaaacacaaaccatatcacaaaccaatcacatacgttcacacattctcattctctctctcaacaaaacnnnnnnnncactcacaaactcat |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| || ||| || ||||| |||| ||||||||||||| ||| | ||||||||| |
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| T |
103112 |
ctcctatcacaaacacaaaccatatcacaatccaatcacacacattctca--ttctc--tctccctctcaacaaaacaaaaaaaacacacgcaaactcat |
103207 |
T |
|
| Q |
124 |
caaaccgttacaacaatggaaattgaaacaaaccaagcaatggtagttacaaagaaagtatggaacacactacgtataattttgttcatgtttacaaaaa |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||| |||| ||||||||||||||||||||||||||| |||||||||| ||||| | ||||| |
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| T |
103208 |
caaaccgttacaacaatggaaattgaaacaacccaaccaatgatagtaacaaagaaagtatggaacacactacgtctaattttgttaatgttaaaaaaaa |
103307 |
T |
|
| Q |
224 |
acattgccaaaagcaaaatggtagcagaattaaatctcttgttaaaacgtagcaaactcgccgccatcaaagccatagccaacactctagctctccgcca |
323 |
Q |
| |
|
|||| ||||||||||||| ||||||| |||||||||||||| ||||||||||||| |||||||| |||||||||||||||||| |||| | |||||||| |
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| T |
103308 |
acatagccaaaagcaaaaaggtagcacaattaaatctcttgctaaaacgtagcaagctcgccgctatcaaagccatagccaaccctctcaccctccgcca |
103407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 116 - 347
Target Start/End: Original strand, 86524 - 86762
Alignment:
| Q |
116 |
aaactcatcaaaccgttacaacaa-------tggaaattgaaacaaaccaagcaatggtagttacaaagaaagtatggaacacactacgtataattttgt |
208 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||| |||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
86524 |
aaactcatcaaaccgttacaacaaacaagaatggaaattgaaacaaaccaactaattatagtaacaaagaaagtatggaacacactgcgtataattttgt |
86623 |
T |
|
| Q |
209 |
tcatgtttacaaaaaacattgccaaaagcaaaatggtagcagaattaaatctcttgttaaaacgtagcaaactcgccgccatcaaagccatagccaacac |
308 |
Q |
| |
|
||||||| ||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
86624 |
tcatgttaacaaaaaacatagctaaaagcaaaatggtagcagaattaaatctcttgctaaaacgtagcaaactcgccgccatcaaagccatagccaacac |
86723 |
T |
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| Q |
309 |
tctagctctccgccaccactcgactacctccttcatctc |
347 |
Q |
| |
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|||||||||||||||||||||| | |||||||| |||| |
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| T |
86724 |
tctagctctccgccaccactcgtccgcctccttcgtctc |
86762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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