View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19654_high_8 (Length: 420)

Name: NF19654_high_8
Description: NF19654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19654_high_8
NF19654_high_8
[»] chr7 (5 HSPs)
chr7 (20-376)||(37580774-37581134)
chr7 (127-291)||(37480685-37480857)
chr7 (127-291)||(6778583-6778755)
chr7 (127-291)||(6774296-6774468)
chr7 (127-224)||(37476241-37476335)
[»] chr4 (3 HSPs)
chr4 (127-221)||(55118878-55118972)
chr4 (246-283)||(52791814-52791851)
chr4 (245-285)||(11160852-11160892)
[»] chr5 (1 HSPs)
chr5 (237-293)||(8992555-8992611)
[»] chr1 (1 HSPs)
chr1 (127-293)||(45071637-45071811)
[»] chr3 (1 HSPs)
chr3 (237-293)||(50915239-50915295)


Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 20 - 376
Target Start/End: Original strand, 37580774 - 37581134
Alignment:
Q  20 ctgatttcgttaaggttgataacgctatgcttttggagtctgcgagttccaatgatcttgaggttcagaagaatgtggaagcaggctgggacgctgcggt 119  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37580774 ctgatttcgttaaggttgataaggctatgcttttggagtctgcgagttccaatgatcttgaggttcagaagaatgtggaagcaggctgggacgctgcggt 37580873  T
Q  120 gagtttggatgatcttaaggcttgggacgctgaattcatgaagcatgttgatcaggctatgcttttcgaactcattcaagctgcaaattacttgaacatc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37580874 gagtttggatgatcttaaggcttgggacgctgaattcatgaagcatgttgatcaggctatgcttttcgaactcattcaagctgcaaattacttgaacatc 37580973  T
Q  220 aagagcctgtt---gcttacctgtggcggacatgatcaaggggaagacgccggaggagattcgcaagacatttaacagtcagaataacttcagtccaaag 316  Q
    |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  37580974 aagagcctgttgaagcttacctgtggcggacatgatcaaggggaagacgccggaggagattcgcaagacgtttaacagtcagaataacttcagtccaaag 37581073  T
Q  317 ccgaatgaagaggaggcagctcgtcccggggaaaacccat-ggaatcaataattgtggtta 376  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  37581074 ccgaacgaagaggaggcagctcgtcccggggaaaacccatgggaatcaataattgtggtta 37581134  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 127 - 291
Target Start/End: Complemental strand, 37480857 - 37480685
Alignment:
Q  127 gatgatcttaaggcttgggacgctgaattcatgaagcatgttgatcaggctatgcttttcgaactcattcaagctgcaaattacttgaacatcaagagcc 226  Q
    ||||||||||||  |||||| ||||||||| | |||   ||||||||||||| ||||||||  |||||||  ||||||||||||||||| |||||||| |    
T  37480857 gatgatcttaagaattgggatgctgaattcgtaaag---gttgatcaggctaagcttttcggtctcattcttgctgcaaattacttgaatatcaagagtc 37480761  T
Q  227 tgttg---cttac--------ctgtggcggacatgatcaaggggaagacgccggaggagattcgcaagacatttaa 291  Q
    |  ||   |||||        ||||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||    
T  37480760 tactggatcttacctgccagactgtggcggacatgatcaaagggaagacgccggaggaaattcgaaagacttttaa 37480685  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 127 - 291
Target Start/End: Original strand, 6778583 - 6778755
Alignment:
Q  127 gatgatcttaaggcttgggacgctgaattcatgaagcatgttgatcaggctatgcttttcgaactcattcaagctgcaaattacttgaacatcaagagcc 226  Q
    ||||||||||||  |||||| ||||||||| |||||   |||||||||| ||  |||||||| |||||||  ||||||||||||||||| |||||||| |    
T  6778583 gatgatcttaagaattgggatgctgaattcgtgaag---gttgatcaggatacacttttcgatctcattcttgctgcaaattacttgaatatcaagagtc 6778679  T
Q  227 tgttg---cttac--------ctgtggcggacatgatcaaggggaagacgccggaggagattcgcaagacatttaa 291  Q
    |  ||   |||||        ||||||||||||||||||| |||||||| |||||||| ||||| ||||| |||||    
T  6778680 tactggatcttacatgccagtctgtggcggacatgatcaaagggaagacaccggaggaaattcgaaagacttttaa 6778755  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 127 - 291
Target Start/End: Original strand, 6774296 - 6774468
Alignment:
Q  127 gatgatcttaaggcttgggacgctgaattcatgaagcatgttgatcaggctatgcttttcgaactcattcaagctgcaaattacttgaacatcaagagcc 226  Q
    ||||||||||||  |||||| ||||||||  |||||   ||| ||||| ||| ||||||||| |||||||  ||||||||| ||||||| |||||||| |    
T  6774296 gatgatcttaagaattgggatgctgaatttgtgaag---gttcatcagactacgcttttcgatctcattcttgctgcaaatgacttgaatatcaagagtc 6774392  T
Q  227 tgttg---cttacctg--------tggcggacatgatcaaggggaagacgccggaggagattcgcaagacatttaa 291  Q
    | |||   ||||||||        |||||||||||||||| |||||||| |||||||| ||||| ||||| |||||    
T  6774393 tattggatcttacctgccagtatgtggcggacatgatcaaagggaagacaccggaggaaattcgaaagacttttaa 6774468  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 127 - 224
Target Start/End: Complemental strand, 37476335 - 37476241
Alignment:
Q  127 gatgatcttaaggcttgggacgctgaattcatgaagcatgttgatcaggctatgcttttcgaactcattcaagctgcaaattacttgaacatcaagag 224  Q
    ||||||||||||  |||||| ||||||||| | |||   |||||||||| ||  |||||||| |||||||  ||||||||||||||||| ||||||||    
T  37476335 gatgatcttaagaattgggatgctgaattcgtaaag---gttgatcaggataaacttttcgatctcattcttgctgcaaattacttgaatatcaagag 37476241  T

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Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 127 - 221
Target Start/End: Original strand, 55118878 - 55118972
Alignment:
Q  127 gatgatcttaaggcttgggacgctgaattcatgaagcatgttgatcaggctatgcttttcgaactcattcaagctgcaaattacttgaacatcaa 221  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||| ||  |||  ||| ||| ||| |||||||| |||||||||||||||    
T  55118878 gatgatctcaaggcttgggacgctgaattcatgaagcaggttgatcaggatacccttaacgatctccttctagctgcaatttacttgaacatcaa 55118972  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 283
Target Start/End: Complemental strand, 52791851 - 52791814
Alignment:
Q  246 acatgatcaaggggaagacgccggaggagattcgcaag 283  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  52791851 acatgatcaagggtaagacgccggaggagatttgcaag 52791814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 285
Target Start/End: Original strand, 11160852 - 11160892
Alignment:
Q  245 gacatgatcaaggggaagacgccggaggagattcgcaagac 285  Q
    |||||||||||||| | |||||||||||||||||| |||||    
T  11160852 gacatgatcaagggtaggacgccggaggagattcgtaagac 11160892  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 237 - 293
Target Start/End: Original strand, 8992555 - 8992611
Alignment:
Q  237 ctgtggcggacatgatcaaggggaagacgccggaggagattcgcaagacatttaaca 293  Q
    ||||||| |||||||||||||||||||| || ||||||||||||||||| |||||||    
T  8992555 ctgtggcagacatgatcaaggggaagacacctgaggagattcgcaagacctttaaca 8992611  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 127 - 293
Target Start/End: Complemental strand, 45071811 - 45071637
Alignment:
Q  127 gatgatcttaaggcttgggacgctgaattcatgaagcatgttgatcaggctatgcttttcgaactcattcaagctgcaaattacttgaacatcaagagcc 226  Q
    ||||||||||||  |||||| ||||||||| |||||   ||||||||||||| |||||| || |||||||  |||||||| |||||| | |||||| ||     
T  45071811 gatgatcttaagaattgggatgctgaattcgtgaag---gttgatcaggctacgctttttgacctcattcttgctgcaaactacttggatatcaagggct 45071715  T
Q  227 tgttg---cttacctg--------tggcggacatgatcaaggggaagacgccggaggagattcgcaagacatttaaca 293  Q
    || ||   ||||||||        |||||||||||||||| |||||||| |||||||| ||||| ||||| |||||||    
T  45071714 tgctggatcttacctgccagattgtggcggacatgatcaaagggaagacaccggaggaaattcgaaagacttttaaca 45071637  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 293
Target Start/End: Original strand, 50915239 - 50915295
Alignment:
Q  237 ctgtggcggacatgatcaaggggaagacgccggaggagattcgcaagacatttaaca 293  Q
    |||||||||||||||| || |||||||| |||||||| ||||| || || |||||||    
T  50915239 ctgtggcggacatgatgaaagggaagacaccggaggaaattcgaaacacttttaaca 50915295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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