View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19654_low_1 (Length: 741)
Name: NF19654_low_1
Description: NF19654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19654_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 616; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 13 - 723
Target Start/End: Complemental strand, 10839156 - 10838440
Alignment:
| Q |
13 |
aaaatattaatgtgcattttttgtgcatcctctnnnnnnntgattattgtgcatgttacttttactttcnnnnnnnnatcaagttgtccatgttactgaa |
112 |
Q |
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| T |
10839156 |
aaaatattaatgtgcattttttgtgcatcctctaaaaaaatgattattgtgcatgctacttttactttcttttttttatcaagttgtccatgttactgaa |
10839057 |
T |
|
| Q |
113 |
ataaaattaattagcaatatgatgaagtgtgcatcattcattaatatttatttgctcaatatggctacgagctaaaagtaagtgcttgtattgtaaatta |
212 |
Q |
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| T |
10839056 |
ataaaactaattagcaatatgatgaagtgtgcatcattcattaatatttatttgttcaatatggctacgagctaaaactaagtgcttgtattgtaaatta |
10838957 |
T |
|
| Q |
213 |
aaatcttgatttt-agtcatgcttaaacattgtaagtaactggtaagggtaaacgatcttagtatcttattaccttcagagttcagacagagagacaaac |
311 |
Q |
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| T |
10838956 |
aaatcttgatttttagtcatgcttaaacattgtaagtaactggtaagggtaaacgatcttagtatcttattaccttcagagttcagacagagagacaaac |
10838857 |
T |
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| Q |
312 |
caataacaa-----ttaatttgttattcttttttacagtatttaatttgttaatatttaaaatgctacaagttgaagggcaagttatattatgtttgctc |
406 |
Q |
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| T |
10838856 |
caataacaaggactttaatttgttattcttttttacagtatttaatttgttaatatttaaaatgctacaagttgaagggcaagttatattatgtttgctc |
10838757 |
T |
|
| Q |
407 |
tctttgttttcaaatattttcgtaatcaaattaaataaatagatatataagttttgaaagaacaaacctcactatttcgaaatggatgtccataagtttt |
506 |
Q |
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| T |
10838756 |
tctttgttttcaaatattttcgtaatcaaattaaataaatagatatataagttttgaaagaaccaacctcactatttcgaaatggatggccataagtttt |
10838657 |
T |
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| Q |
507 |
gatctacataacttattgatcatatttactgaagagaggatgagaagtataatgaatgagatcaaatgaatattgcaaattaaatgaagaaaggtgagat |
606 |
Q |
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| T |
10838656 |
gatctacataacttattgatcatatttactgaagagaggatgagaagtataatgaatgagatcaaatgaatattgcaaattaaatgaagaaatgtgagat |
10838557 |
T |
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| Q |
607 |
atatatgtttataaacgaagctttaaatagaaaagccataaataataagagaagcatgcatgaggatgaaataaataggaaagtgtagtgatagagtggg |
706 |
Q |
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| T |
10838556 |
atatatgtttataaacgaagctttaaatagaaaagccataaataataagagaagcatgcatgaggatgaaataaataggaaagtgtagtgatagagtggg |
10838457 |
T |
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| Q |
707 |
aaacaaaagtggtcttt |
723 |
Q |
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| T |
10838456 |
aaacaaaagtggtcttt |
10838440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 436 - 479
Target Start/End: Complemental strand, 10870356 - 10870313
Alignment:
| Q |
436 |
attaaataaatagatatataagttttgaaagaacaaacctcact |
479 |
Q |
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| T |
10870356 |
attaaataaatagatatataagttttgaaggaacaaacctcact |
10870313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 566 - 603
Target Start/End: Complemental strand, 10870256 - 10870219
Alignment:
| Q |
566 |
gatcaaatgaatattgcaaattaaatgaagaaaggtga |
603 |
Q |
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| T |
10870256 |
gatcaaattaatatttcaaattaaatgaagaaaggtga |
10870219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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