View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19654_low_11 (Length: 348)
Name: NF19654_low_11
Description: NF19654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19654_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 341
Target Start/End: Original strand, 31058194 - 31058517
Alignment:
| Q |
18 |
ccttccttgagaatggtctgaaatttgaagctcatacaataaagcaggatttgaaggacaacataaatccctttttcttatggctgcaacaaggacctgt |
117 |
Q |
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| T |
31058194 |
ccttccttgagaatggtctgaaatttgaagctcatacaataaagcaggatttgaaggacaacataaatccctttttcttatggctgcaacaaggacctgt |
31058293 |
T |
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| Q |
118 |
aaaattggcagtagagggtttccttccggcttccggtacctatataagggcttacctacacagaaagttatgacagcaatagccataaaagctgtaagta |
217 |
Q |
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| T |
31058294 |
aaaattggcagtagagggtttccttccggcttccggtatctatacaagggcttacctacacagaaagttatgacagcaatagccataaaagctgtaagta |
31058393 |
T |
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| Q |
218 |
ttagagtagcaactccccagttgacaaagtcttgaacatatacaatcactgtggaactaatcagcactgcaaagcacaatccaaagttccaccagttgaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31058394 |
ttagagtagcaactccccagttgacaaagtcttgaacatatacaatcactgtggaactaatcagcactgcaaagcacaatccaaagttccaccagttgaa |
31058493 |
T |
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| Q |
318 |
gaaagacagcttcttcttcatttc |
341 |
Q |
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| T |
31058494 |
gaaagacagcttcttcttcatttc |
31058517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 341
Target Start/End: Original strand, 31082116 - 31082408
Alignment:
| Q |
49 |
tcatacaataaagcaggatttgaaggacaacataaatccctttttcttatggctgcaacaaggacctgtaaaattggcagtagagggtttccttccggct |
148 |
Q |
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| T |
31082116 |
tcatacaataaagaaggatttgagggacaagataattttctcttccttatagctgcaactagtacctgtaaaattggttttaaagtatttccttgtggcc |
31082215 |
T |
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| Q |
149 |
tccggtacctatataagggcttacctacacagaaagttatgacagcaatagccataaaagctgtaagtattagagtagcaactccccagttgacaaagtc |
248 |
Q |
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| T |
31082216 |
ttctatacctataaaaaggcttccccacataaaatgctatgatacataaagccataagaattgtgagaataagactagcagctccccagctaacattgtc |
31082315 |
T |
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| Q |
249 |
ttgaacatatacaatcactgtggaactaatcagcactgcaaagcacaatccaaagttccaccagttgaagaaagacagcttcttcttcatttc |
341 |
Q |
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| T |
31082316 |
ttggacataaacaatcactgttgcaccaagaagcaatgcaaaacacagtgcaaagttccaccagttgaagaaagacattttcttcttcctttc |
31082408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 246 - 341
Target Start/End: Original strand, 31065265 - 31065360
Alignment:
| Q |
246 |
gtcttgaacatatacaatcactgtggaactaatcagcactgcaaagcacaatccaaagttccaccagttgaagaaagacagcttcttcttcatttc |
341 |
Q |
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|||||| ||||| ||||||||||| | || || |||| |||||| |||||| ||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
31065265 |
gtcttggacataaacaatcactgttgcaccaagaagcaatgcaaaacacaatgcaaagttccaccagttgaagaaagacattttcttcttcctttc |
31065360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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