View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19654_low_2 (Length: 541)
Name: NF19654_low_2
Description: NF19654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19654_low_2 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 433; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 18 - 541
Target Start/End: Complemental strand, 14884778 - 14884254
Alignment:
| Q |
18 |
acttctgtcatatttattgcatcatttcctttttctcctatttcctatgttcaacattaatttgactttctcaaaaactcaacctcatctcttccccaca |
117 |
Q |
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| T |
14884778 |
acttctctcatatttattgcatcatttcctttttctcctatttcctatgttcaacattaatttgactttctcaaaaactcaacctcatctcttccccaca |
14884679 |
T |
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| Q |
118 |
ttaaattcaaatgaccaaacattaatattttacacatatgtcattccaacgccatgcaatgcatgttcaaccaaattaaccaatcaacaaacttacgttc |
217 |
Q |
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| T |
14884678 |
ttaaattcaaatgaccaaacattaatattctacacatatgtcattccaacgccatgcaatgcatgttcaaccaaattaaccaatcaacaaacttacgttc |
14884579 |
T |
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| Q |
218 |
acattatttcatttccactgcaagccatgtgaaaatattgnnnnnnntat---catattactaccatgtatggtaaatattcccaatgcatgcagcccta |
314 |
Q |
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| T |
14884578 |
acataatttcatttccacagcaagccatgtgaaaatattgaaaaaaatactaccatattactaccatgtatggtaaatattcccaatgcatgcaacccta |
14884479 |
T |
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| Q |
315 |
tgaatgaatacaattttctgcaacacgcgtcttctcacaatccaagaacaactactaccgtattccaaactcttcaaccaactaaattaaatttcattgt |
414 |
Q |
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| T |
14884478 |
tgaatgaatacaattttctgctacacgcgtcttctcacaatccaagaacaactactaccgtattccaaactcttcaaccaactaaattaaatttcattgt |
14884379 |
T |
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| Q |
415 |
ctttattcatattcataagagttcatatatttttctacgtttgtgacaattcttttcaaactaccttaaaccaaaaatagcattaacaatgaaactatca |
514 |
Q |
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| T |
14884378 |
ctttattcatattcataagagttc--atatttttctacgtttgtgacaattcttttcaaactagcttaaaccaaaaatagcattaacaatgaaagtatct |
14884281 |
T |
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| Q |
515 |
atactttttctcctatgcttctcctct |
541 |
Q |
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| T |
14884280 |
atactttttctcttatgcttcttctct |
14884254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 414 - 541
Target Start/End: Complemental strand, 14870189 - 14870064
Alignment:
| Q |
414 |
tctttattcatattcataagagttcatatatttttctacgtttgtgacaattcttttcaaactaccttaaaccaaaaatagcattaacaatgaaactatc |
513 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
14870189 |
tctttattcatattcataagagttcatat--ttttctacgtttgtgacaattcttttcaaactagcttaaaccaaaaatagcattaacaatgaaagtatc |
14870092 |
T |
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| Q |
514 |
aatactttttctcctatgcttctcctct |
541 |
Q |
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| T |
14870091 |
gatactttttctcttatgcttcttctct |
14870064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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