View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19654_low_3 (Length: 526)
Name: NF19654_low_3
Description: NF19654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19654_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 1 - 509
Target Start/End: Original strand, 43339426 - 43339936
Alignment:
| Q |
1 |
ttctgtgtgtgattccctcatttattcagtgcggtttctaacagagatgttaaggtgtccgacatgggatgttggtgagataatatgtggatttggagat |
100 |
Q |
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| T |
43339426 |
ttctgtgtgtgattccctcatttattcagtgcggtttctaacagagatgttaaggtgtccgacatgggatgttggtgagataatatgtggatttggagat |
43339525 |
T |
|
| Q |
101 |
ggaattggtccaaaaatttgcaaccggaccatctgttttgcagtaggaaattctgcaggtgcagccgcgaccatctgtttctgataccttctgctggctg |
200 |
Q |
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| T |
43339526 |
ggaattggtccaaaaatttgcaaccggaccatctgttttgcagtaggaaattctgcaggtgcagccgcgaccatctgtttctgataccttctgctggctg |
43339625 |
T |
|
| Q |
201 |
cccgacgaaggagcagggttcttggtgnnnnnnnnttctatttggtgctgtcaaatttgttccgtgatgctgaatatgatgaagattattgtggcagcag |
300 |
Q |
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| T |
43339626 |
cccgacgaaggagcagggttcttggtgaaaaaaaattctatttggtgctgtcaaatttgttccgtgatgctgaatatgatgaagattattgtggcagcag |
43339725 |
T |
|
| Q |
301 |
cttcgcagatttggagcaggctgccagctagagtggaattgcggagaagggaagtaataagagatgttcaccgacaatgt--tgtgtgtgctgctttaga |
398 |
Q |
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| T |
43339726 |
cttcgcagatttggagcaggctgccaactagagtggaattgcggagaagggaagtaataagagatgttcaccgacaatgttgtgtgtgtgctgctttaga |
43339825 |
T |
|
| Q |
399 |
gaaattgaaacatctagccatttgtttgcaatttgctcagagatgttggaagcgtagagcttgatttttaattggttgggagtgggggctgaaggtttga |
498 |
Q |
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| T |
43339826 |
gaaattgaaacatctagccatttgtttgcaacttgctcagagacgttggaagcgtggagcttgatttttaattggttgggagtgggggctgaaggtttgg |
43339925 |
T |
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| Q |
499 |
gatggtgatgt |
509 |
Q |
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| T |
43339926 |
gatggtgatgt |
43339936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 376 - 495
Target Start/End: Complemental strand, 1015088 - 1014969
Alignment:
| Q |
376 |
aatgttgtgtgtgctgctttagagaaattgaaacatctagccatttgtttgcaatttgctcagagatgttggaagcgtagagcttgatttttaattggtt |
475 |
Q |
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||||||||||||| |||||||||||||||||||||||| ||| |||||||||| ||||||| ||| || ||| | | ||||||||||| |||||| || |
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| T |
1015088 |
aatgttgtgtgtggtgctttagagaaattgaaacatctggccctttgtttgcatcttgctcaaagacgtcggatgtatggagcttgatttgtaattgatt |
1014989 |
T |
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| Q |
476 |
gggagtgggggctgaaggtt |
495 |
Q |
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| T |
1014988 |
gggagtggaggctgaaggtt |
1014969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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