View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19654_low_4 (Length: 457)
Name: NF19654_low_4
Description: NF19654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19654_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 15 - 439
Target Start/End: Complemental strand, 50095641 - 50095217
Alignment:
| Q |
15 |
atgaacaaaaagaaaccagaatgtagcttgagtaaatatttaattggtgcaaaattgtgggtggcctatttcaacaattcacaaactcaaaagacgttgt |
114 |
Q |
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| T |
50095641 |
atgaacaaaaagaaaccagaatgtagcttgagtaaatatttaattggtgcaaaattgtgggtggcctatttcaacaattcacaaactcaaaagacgttgt |
50095542 |
T |
|
| Q |
115 |
tatgtaaccagtatgttagcaggtcgggttacagatacaggtctaagtaatgttaagaacataaacctcatccttctatcacattccacagaccacagtt |
214 |
Q |
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| T |
50095541 |
tatgtaaccagtatgttagcaggtcgggttacagatacaggtctaagtaatgttaagaacataaacctcatccttctatcacattccacagatcacagtt |
50095442 |
T |
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| Q |
215 |
actctgaacaaattccagtgaatttcacaagtcattaggtcatcccaaagagcataaatatgcatcaatttaccgtagaagatgccacaatcatttagat |
314 |
Q |
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| T |
50095441 |
actctgaacaaattccagtgaatttcacaagtcattaggtcatcccaaagagcataaatatgcatcaatttaccgtagaagatgccacaatcatttagat |
50095342 |
T |
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| Q |
315 |
atatcaaagaatgacttataagttataagcaaacataaaacaatatacgaacataagctaactggattaatctcaatgttaaaggcagccttaggcactg |
414 |
Q |
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| T |
50095341 |
atatcaaagaatgacttataagttataagcaaacataaaacaatatacgaacataagctaactggattaatctcaatgttaaaggcagccttaggcactg |
50095242 |
T |
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| Q |
415 |
ccatattcatttcctggattaatat |
439 |
Q |
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| T |
50095241 |
ccatattcatttcctggatcaatat |
50095217 |
T |
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Back To:
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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 361 - 439
Target Start/End: Original strand, 35497317 - 35497394
Alignment:
| Q |
361 |
acgaacataagctaactggattaatctcaatgttaaaggcagccttaggcactgccatattcatttcctggattaatat |
439 |
Q |
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| T |
35497317 |
acgaacagaagctaactggattaatttcaatgtcaaa-gcagccttaggcactgtcagattcatttcctgaatcaatat |
35497394 |
T |
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