View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19654_low_5 (Length: 435)
Name: NF19654_low_5
Description: NF19654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19654_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 36 - 420
Target Start/End: Complemental strand, 29136687 - 29136303
Alignment:
| Q |
36 |
ataagcaaacactgaatattgcaaaaccgataaatagagacaaacgatgaatattttttccaaataaatccgctagaattggtaaaactcactcgtccaa |
135 |
Q |
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| T |
29136687 |
ataagcaaacaatgaatattgtaa--ctgataaatagagacaaacaatgaatattttttccaaataaatccgctagaattggtaaaactcactcgtccaa |
29136590 |
T |
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| Q |
136 |
aatatgtcattttagtcaatttgtggagtagtgttttattttaaagaagataaattaactcacttaaat------tgataag---tgagtaatgttattt |
226 |
Q |
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| T |
29136589 |
aatatgtcattttagtcaatctgtagagtagtgttttattttaaagaagataaattaactcacttaaattggcactgaaacgcgtggagtaatgttattt |
29136490 |
T |
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| Q |
227 |
cttgtttagtttcttctttacatgtatatgggttcaagcatctcgtgtactccaattgataagtttttgcttatataaaaaatgaaattttaagttttta |
326 |
Q |
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| T |
29136489 |
attgtttagtttcttctttacatgtatatgggttcaagcatctcgtgtactccaattg--------ttgcttatataaaaaatgaaattttaagtgttta |
29136398 |
T |
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| Q |
327 |
gtgtacatttgtcacaaaaat-aaacgtgatattgtaaatagagatgagacttatgctggtcatgcactctaaacagcaacatacgtgattagtg |
420 |
Q |
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| T |
29136397 |
gtgtacatttgtcacaaaaataaaacgtgatattgtacatagagatgagacttatgctggtcatgcactctaaacagcaacatacgtgattagtg |
29136303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 209
Target Start/End: Original strand, 3677305 - 3677345
Alignment:
| Q |
169 |
ttttattttaaagaagataaattaactcacttaaattgata |
209 |
Q |
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|||| |||| |||||| |||||||||||||||||||||||| |
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| T |
3677305 |
ttttttttttaagaagctaaattaactcacttaaattgata |
3677345 |
T |
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