View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19654_low_6 (Length: 435)

Name: NF19654_low_6
Description: NF19654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19654_low_6
NF19654_low_6
[»] chr6 (6 HSPs)
chr6 (9-420)||(8484711-8485115)
chr6 (23-135)||(8492351-8492455)
chr6 (45-135)||(8501666-8501756)
chr6 (1-125)||(8503562-8503686)
chr6 (186-226)||(8492230-8492271)
chr6 (323-420)||(10324400-10324497)
[»] chr1 (2 HSPs)
chr1 (323-420)||(3430534-3430630)
chr1 (351-420)||(42795376-42795445)
[»] chr4 (6 HSPs)
chr4 (324-420)||(27598259-27598355)
chr4 (324-420)||(34360841-34360937)
chr4 (322-420)||(24355813-24355911)
chr4 (351-420)||(34650863-34650932)
chr4 (323-420)||(55291240-55291337)
chr4 (323-420)||(46405522-46405622)
[»] chr7 (4 HSPs)
chr7 (326-420)||(36016414-36016508)
chr7 (320-420)||(41467563-41467663)
chr7 (351-420)||(46777274-46777343)
chr7 (322-413)||(41742417-41742508)
[»] chr2 (4 HSPs)
chr2 (326-420)||(37357238-37357332)
chr2 (323-420)||(15354413-15354510)
chr2 (327-420)||(34353236-34353329)
chr2 (322-378)||(14714421-14714477)
[»] chr3 (3 HSPs)
chr3 (351-413)||(26141736-26141798)
chr3 (354-420)||(22938527-22938593)
chr3 (355-420)||(3383562-3383627)
[»] chr8 (4 HSPs)
chr8 (351-420)||(32286031-32286100)
chr8 (323-420)||(45197175-45197272)
chr8 (351-420)||(7643740-7643809)
chr8 (342-406)||(18421339-18421403)
[»] chr5 (1 HSPs)
chr5 (362-420)||(38353671-38353729)


Alignment Details
Target: chr6 (Bit Score: 328; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 9 - 420
Target Start/End: Complemental strand, 8485115 - 8484711
Alignment:
Q  9 gggtcatttgcgtgcttgcaaatggattgcacatcgacatcatgatctgcataggaggatgcaacaaataaaacaaacacaacaactaggattgagaaac 108  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8485115 gggtcatttgcttgcttgcaaatggattgcacatcgacatcatgatctgcataggaggatgcaacaaataaaagaaacacaacaactaggattgagaaac 8485016  T
Q  109 gaaccatattgtttttgctctttttctttggttggtatgtttggtgattttcattgtcttcgctagggctttatatatagatttcatcaattcaaaacaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8485015 gaaccatattgtttttgctctttttctttggttggtatgtt-ggtgatttccattgtcttcgctagggctttatatatagatttcatcaattcaaaacaa 8484917  T
Q  209 tacaataaatatggtcaaagtcccatttaaataatatgcatattatatgcaggtatatctatttctttatctttatctctatctcaatttataaaaattt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||| ||||    
T  8484916 tacaataaatatggtcaaagtcccatttaaataatatgcatattatatgcaggtatatctatttctttatctttatctct------atttataaacattt 8484823  T
Q  309 accnnnnnnnctttagggaaatgctaatcagttccctcagaccaatggttaaggaagcaaatatagtaatctttaattggaatttgtgcattcaacttct 408  Q
    |||       ||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8484822 acctttttttctttagggaaatgctaaccagttccgtcagatcaatggttaaggaagcaaatatagtaatttttaattggaatttgtgcattcaacttct 8484723  T
Q  409 caaaagtataaa 420  Q
    ||||||||||||    
T  8484722 caaaagtataaa 8484711  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 23 - 135
Target Start/End: Complemental strand, 8492455 - 8492351
Alignment:
Q  23 cttgcaaatggattgcacatcgacatcatgatctgcataggaggatgcaacaaataaaacaaacacaacaactaggattgagaaacgaaccatattgttt 122  Q
    ||||||||||||||||||||| |||||| ||        ||||||||||||||| |||| ||||||| ||||||||||||| ||||||| ||||||| ||    
T  8492455 cttgcaaatggattgcacatccacatcaaga--------ggaggatgcaacaaagaaaagaaacacaccaactaggattgaaaaacgaagcatattgctt 8492364  T
Q  123 ttgctctttttct 135  Q
    |||||||||||||    
T  8492363 ttgctctttttct 8492351  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 45 - 135
Target Start/End: Complemental strand, 8501756 - 8501666
Alignment:
Q  45 acatcatgatctgcataggaggatgcaacaaataaaacaaacacaacaactaggattgagaaacgaaccatattgtttttgctctttttct 135  Q
    ||||||| | |||||||||| ||||| ||| | |||| ||||||||||||||||||| ||||||||  |||||| ||||||||||||||||    
T  8501756 acatcattagctgcataggacgatgcgacacaaaaaagaaacacaacaactaggattaagaaacgagacatattatttttgctctttttct 8501666  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 8503686 - 8503562
Alignment:
Q  1 aaaaagaggggtcatttgcgtgcttgcaaatggattgcacatcgacatcatgatctgcataggaggatgcaacaaataaaacaaacacaacaactaggat 100  Q
    ||||||| ||||| || || | ||||||||| | ||||||||| ||| ||| | | |||||||||||||||||| | |||| |||||||||||||||| |    
T  8503686 aaaaagaagggtctttggcttccttgcaaatagcttgcacatcaacaacattaacggcataggaggatgcaacacaaaaaagaaacacaacaactagggt 8503587  T
Q  101 tgagaaacgaaccatattgtttttg 125  Q
    | ||||| || ||||| ||| ||||    
T  8503586 taagaaatgagccatagtgtatttg 8503562  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 8492271 - 8492230
Alignment:
Q  186 tagatttcatcaattcaaaacaatacaa-taaatatggtcaa 226  Q
    ||||||||||||||| |||||||||||| |||||||||||||    
T  8492271 tagatttcatcaattgaaaacaatacaattaaatatggtcaa 8492230  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 420
Target Start/End: Original strand, 10324400 - 10324497
Alignment:
Q  323 agggaaatgctaatcagttccctcagaccaatggttaaggaagcaaatatagtaatctttaattggaatttgtgcattcaacttctcaaaagtataaa 420  Q
    ||||||||| ||| |||| ||||||   |||  |||||||| |||||||||||| | ||  ||||||| |||| ||||||||| ||||||||| ||||    
T  10324400 agggaaatgttaaccagtgccctcatgacaacagttaaggatgcaaatatagtagtattgcattggaacttgtacattcaactcctcaaaagtctaaa 10324497  T

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Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 323 - 420
Target Start/End: Original strand, 3430534 - 3430630
Alignment:
Q  323 agggaaatgctaatcagttccctcagaccaatggttaaggaagcaaatatagtaatctttaattggaatttgtgcattcaacttctcaaaagtataaa 420  Q
    ||||||||||||| |||| |||||||| ||||||||||||||| |||||||| ||||||  ||||||| |||||||||||||||||||||||||||||    
T  3430534 agggaaatgctaaccagtgccctcagagcaatggttaaggaag-aaatatagcaatcttgcattggaacttgtgcattcaacttctcaaaagtataaa 3430630  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 351 - 420
Target Start/End: Original strand, 42795376 - 42795445
Alignment:
Q  351 caatggttaaggaagcaaatatagtaatctttaattggaatttgtgcattcaacttctcaaaagtataaa 420  Q
    |||| ||||||||| ||||||||||||||||  |||| || |||| |||||||||| | |||||||||||    
T  42795376 caatagttaaggaaacaaatatagtaatcttacattgaaacttgtacattcaactttttaaaagtataaa 42795445  T

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Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 324 - 420
Target Start/End: Complemental strand, 27598355 - 27598259
Alignment:
Q  324 gggaaatgctaatcagttccctcagaccaatggttaaggaagcaaatatagtaatctttaattggaatttgtgcattcaacttctcaaaagtataaa 420  Q
    ||||||||||||||||| |||| ||  |||||||||  ||||||||||||||||||||  ||||||| |||||||||||||||||||||||| ||||    
T  27598355 gggaaatgctaatcagtgcccttagggcaatggttagagaagcaaatatagtaatcttgcattggaacttgtgcattcaacttctcaaaagtctaaa 27598259  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 324 - 420
Target Start/End: Original strand, 34360841 - 34360937
Alignment:
Q  324 gggaaatgctaatcagttccctcagaccaatggttaaggaagcaaatatagtaatctttaattggaatttgtgcattcaacttctcaaaagtataaa 420  Q
    |||||||| |||||||| |||||||  ||||||||||||||||||||||||||||||   |||| || |||||||||||||| ||||||||| ||||    
T  34360841 gggaaatgttaatcagtgccctcagggcaatggttaaggaagcaaatatagtaatctcgtattgaaacttgtgcattcaactcctcaaaagtctaaa 34360937  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 322 - 420
Target Start/End: Complemental strand, 24355911 - 24355813
Alignment:
Q  322 tagggaaatgctaatcagttccctcagaccaatggttaaggaagcaaatatagtaatctttaattggaatttgtgcattcaacttctcaaaagtataaa 420  Q
    |||||||||||||| ||||  |||||   |||||||||||||||||||||||||||| |   ||||||| |||||||||||||| ||||||||| ||||    
T  24355911 tagggaaatgctaaccagtgtcctcaagacaatggttaaggaagcaaatatagtaatatcgcattggaacttgtgcattcaactcctcaaaagtctaaa 24355813  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 351 - 420
Target Start/End: Complemental strand, 34650932 - 34650863
Alignment:
Q  351 caatggttaaggaagcaaatatagtaatctttaattggaatttgtgcattcaacttctcaaaagtataaa 420  Q
    |||||||||| ||||||||||||||||| ||  |||||||||||||||||||||| ||||||||| ||||    
T  34650932 caatggttaaagaagcaaatatagtaattttgcattggaatttgtgcattcaactcctcaaaagtttaaa 34650863  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 323 - 420
Target Start/End: Original strand, 55291240 - 55291337
Alignment:
Q  323 agggaaatgctaatcagttccctcagaccaatggttaaggaagcaaatatagtaatctttaattggaatttgtgcattcaacttctcaaaagtataaa 420  Q
    ||||||||| ||| |||| |||||||  ||||| |||||||||||||||||||||| ||  |||| || ||||||||| |||||||||||| ||||||    
T  55291240 agggaaatgttaaccagtgccctcagggcaatgattaaggaagcaaatatagtaattttgcattgaaacttgtgcattaaacttctcaaaaatataaa 55291337  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 323 - 420
Target Start/End: Complemental strand, 46405622 - 46405522
Alignment:
Q  323 agggaaatgctaatcagttccctcagaccaatggttaaggaagcaaatat---agtaatctttaattggaatttgtgcattcaacttctcaaaagtataa 419  Q
    ||||||||||||| |||| |||||||  ||||||||||||||||||||||   |||||||||  ||   || ||||||||||| ||| ||||||||||||    
T  46405622 agggaaatgctaaccagtgccctcagggcaatggttaaggaagcaaatatagcagtaatcttgcatcaaaacttgtgcattcagcttttcaaaagtataa 46405523  T
Q  420 a 420  Q
    |    
T  46405522 a 46405522  T

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Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 326 - 420
Target Start/End: Original strand, 36016414 - 36016508
Alignment:
Q  326 gaaatgctaatcagttccctcagaccaatggttaaggaagcaaatatagtaatctttaattggaatttgtgcattcaacttctcaaaagtataaa 420  Q
    |||||| ||| |||| |||||||  |||||||||||||||||||||||||||| ||  || |||| |||||||||||||||||||||||||||||    
T  36016414 gaaatgttaaccagtgccctcaggacaatggttaaggaagcaaatatagtaatattgcatcggaacttgtgcattcaacttctcaaaagtataaa 36016508  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 320 - 420
Target Start/End: Complemental strand, 41467663 - 41467563
Alignment:
Q  320 tttagggaaatgctaatcagttccctcagaccaatggttaaggaagcaaatatagtaatctttaattggaatttgtgcattcaacttctcaaaagtataa 419  Q
    ||||||||||||||||||||| |||||||| ||||||||||| || ||||||||||||||    |||  || |||||||||||||||||||||||| |||    
T  41467663 tttagggaaatgctaatcagtgccctcagagcaatggttaagaaaacaaatatagtaatcccgtattaaaacttgtgcattcaacttctcaaaagtctaa 41467564  T
Q  420 a 420  Q
    |    
T  41467563 a 41467563  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 351 - 420
Target Start/End: Original strand, 46777274 - 46777343
Alignment:
Q  351 caatggttaaggaagcaaatatagtaatctttaattggaatttgtgcattcaacttctcaaaagtataaa 420  Q
    ||||||||||| || |||||| |||||||||  ||||||| ||||||||||||||||||||||| |||||    
T  46777274 caatggttaagaaaacaaatacagtaatcttgcattggaacttgtgcattcaacttctcaaaagcataaa 46777343  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 322 - 413
Target Start/End: Complemental strand, 41742508 - 41742417
Alignment:
Q  322 tagggaaatgctaatcagttccctcagaccaatggttaaggaagcaaatatagtaatctttaattggaatttgtgcattcaacttctcaaaa 413  Q
    |||||||||||||| |||  ||||||    |||||||||| ||| ||||||||||| |||  | ||||| ||||||||||||||||||||||    
T  41742508 tagggaaatgctaaccagaaccctcaagataatggttaagaaagtaaatatagtaagcttgcagtggaacttgtgcattcaacttctcaaaa 41742417  T

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Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 326 - 420
Target Start/End: Original strand, 37357238 - 37357332
Alignment:
Q  326 gaaatgctaatcagttccctcagaccaatggttaaggaagcaaatatagtaatctttaattggaatttgtgcattcaacttctcaaaagtataaa 420  Q
    |||||||||| |||| | |||||  |||| ||||||||||||||||||||||||||  |||| || |||||||||||||||||||||||||||||    
T  37357238 gaaatgctaaccagtgctctcagggcaatagttaaggaagcaaatatagtaatcttgcattgaaacttgtgcattcaacttctcaaaagtataaa 37357332  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 323 - 420
Target Start/End: Complemental strand, 15354510 - 15354413
Alignment:
Q  323 agggaaatgctaatcagttccctcagaccaatggttaaggaagcaaatatagtaatctttaattggaatttgtgcattcaacttctcaaaagtataaa 420  Q
    |||||||||||||  ||| | |||||| ||||| |||| |||| |||||||||||| ||  ||||||| |||||||||||||||||||||||||||||    
T  15354510 agggaaatgctaactagtgctctcagagcaatgattaatgaagtaaatatagtaattttacattggaacttgtgcattcaacttctcaaaagtataaa 15354413  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 327 - 420
Target Start/End: Original strand, 34353236 - 34353329
Alignment:
Q  327 aaatgctaatcagttccctcagaccaatggttaaggaagcaaatatagtaatctttaattggaatttgtgcattcaacttctcaaaagtataaa 420  Q
    |||||||||  ||| |||||||   ||||||||||||| ||||||||||||| ||  |||| || |||||||||||||| ||||||||| ||||    
T  34353236 aaatgctaacaagtgccctcagggaaatggttaaggaaccaaatatagtaattttgcattgaaacttgtgcattcaactcctcaaaagtttaaa 34353329  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 14714477 - 14714421
Alignment:
Q  322 tagggaaatgctaatcagttccctcagaccaatggttaaggaagcaaatatagtaat 378  Q
    |||| ||||||||| || | ||||| || ||||| ||||||||||||||||||||||    
T  14714477 taggaaaatgctaaccaataccctctgaacaatgtttaaggaagcaaatatagtaat 14714421  T

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Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 351 - 413
Target Start/End: Complemental strand, 26141798 - 26141736
Alignment:
Q  351 caatggttaaggaagcaaatatagtaatctttaattggaatttgtgcattcaacttctcaaaa 413  Q
    |||||||||||||||||||||||||||||||  ||||||| |||||||||||||| |||||||    
T  26141798 caatggttaaggaagcaaatatagtaatcttgcattggaacttgtgcattcaactcctcaaaa 26141736  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 420
Target Start/End: Complemental strand, 22938593 - 22938527
Alignment:
Q  354 tggttaaggaagcaaatatagtaatctttaattggaatttgtgcattcaacttctcaaaagtataaa 420  Q
    |||||||| || |||||||||||||||   || |||| |||| ||||||||||||||||||| ||||    
T  22938593 tggttaagaaaacaaatatagtaatctcgcatgggaacttgtacattcaacttctcaaaagtctaaa 22938527  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 420
Target Start/End: Original strand, 3383562 - 3383627
Alignment:
Q  355 ggttaaggaagcaaatatagtaatctttaattggaatttgtgcattcaacttctcaaaagtataaa 420  Q
    ||||||| || |||||||| ||||||   ||||||| |||||||||||||| ||||||||| ||||    
T  3383562 ggttaagaaaacaaatataataatctcgtattggaacttgtgcattcaactcctcaaaagtctaaa 3383627  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 351 - 420
Target Start/End: Original strand, 32286031 - 32286100
Alignment:
Q  351 caatggttaaggaagcaaatatagtaatctttaattggaatttgtgcattcaacttctcaaaagtataaa 420  Q
    ||||| ||||||||||||||||| || | ||  ||||||| |||||||||||||||||||||||||||||    
T  32286031 caatgattaaggaagcaaatataatatttttgcattggaacttgtgcattcaacttctcaaaagtataaa 32286100  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 323 - 420
Target Start/End: Complemental strand, 45197272 - 45197175
Alignment:
Q  323 agggaaatgctaatcagttccctcagaccaatggttaaggaagcaaatatagtaatctttaattggaatttgtgcattcaacttctcaaaagtataaa 420  Q
    ||||||||||||| |||| |||| ||  |||| |||||||||||| ||||| ||||||   |||| || ||||||||||||||| |||||||| ||||    
T  45197272 agggaaatgctaaccagtacccttagggcaatagttaaggaagcagatataataatctcgcattgaaacttgtgcattcaacttttcaaaagtttaaa 45197175  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 351 - 420
Target Start/End: Complemental strand, 7643809 - 7643740
Alignment:
Q  351 caatggttaaggaagcaaatatagtaatctttaattggaatttgtgcattcaacttctcaaaagtataaa 420  Q
    ||||||||||| ||| |||||||||||| ||  |||| || |||||||||||||| ||||||||| ||||    
T  7643809 caatggttaagaaagaaaatatagtaattttgtattgaaacttgtgcattcaactcctcaaaagtttaaa 7643740  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 406
Target Start/End: Complemental strand, 18421403 - 18421339
Alignment:
Q  342 ccctcagaccaatggttaaggaagcaaatatagtaatctttaattggaatttgtgcattcaactt 406  Q
    |||||||  ||||||||||| |||||||||||||||| |   || | ||||||||||||||||||    
T  18421403 ccctcagggcaatggttaagaaagcaaatatagtaatatcgcatcgcaatttgtgcattcaactt 18421339  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 420
Target Start/End: Complemental strand, 38353729 - 38353671
Alignment:
Q  362 gaagcaaatatagtaatctttaattggaatttgtgcattcaacttctcaaaagtataaa 420  Q
    |||||||||||||||||||   ||||||| |||||||||||||| ||||||||| ||||    
T  38353729 gaagcaaatatagtaatctcgcattggaacttgtgcattcaactcctcaaaagtctaaa 38353671  T

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