View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19654_low_7 (Length: 421)
Name: NF19654_low_7
Description: NF19654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19654_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 157 - 407
Target Start/End: Original strand, 51755611 - 51755866
Alignment:
| Q |
157 |
ccccctccactcttaccatcaaaagttaaaagaa-----gaacacgctcacagagatgaacatgtcagaaaattctccacttgacactctagctttcaac |
251 |
Q |
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| T |
51755611 |
ccccctccactcttaccatcaaaagtgaaaagaagagaagaacacgctcacagagatgaacatgttagaaaattctccacttgacactctagctttcaac |
51755710 |
T |
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| Q |
252 |
tacttgagcttcgatttcttcaaccatttatggacatggctcgccgtaatcttctggaggatcccaacccctaaacctgaattgttacctccttcccacg |
351 |
Q |
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| T |
51755711 |
tacttgagcttcgatttcttcaaccatttatggacatggctcgccgtcatcttctggaggatcccaacccctaaacctgaattgttacctccttcccacg |
51755810 |
T |
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| Q |
352 |
acacttcctccgataaacctcacctaggtctggaagtgttggaacctcgtcatgat |
407 |
Q |
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| T |
51755811 |
acacttcctccgataaacctcacctaggtctggaagtgttggaacctcgtcatgat |
51755866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 51755474 - 51755536
Alignment:
| Q |
19 |
agtaggcatcttcttgtgtgagatcccatattcccattcacggtccccactcacctgtgttat |
81 |
Q |
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| T |
51755474 |
agtaggcatcttcttgtgtgagatcccatattcccattgacggtccccactcacctgtgttat |
51755536 |
T |
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