View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19654_low_9 (Length: 393)
Name: NF19654_low_9
Description: NF19654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19654_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 10 - 379
Target Start/End: Original strand, 39235881 - 39236250
Alignment:
| Q |
10 |
ataattcttacacatgaacatctaattcaaaagttaaaaataaaagaagaaaagttagtagaagaagttattattttgttgtcacaccaagtattaggaa |
109 |
Q |
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| T |
39235881 |
ataattcttacacatgaacatctaattcaaaagttaaaaataaaagaagaaaagttagtagaagaagtaattatttttttgtcacaccaagtattaggaa |
39235980 |
T |
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| Q |
110 |
ccaacaaaatataatcacaatcacaacctttctgtattaaaaacagattgatgcccccttggtggtgtaacagaatgatgactaacataatcttcatttg |
209 |
Q |
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| T |
39235981 |
ccaacaaaatataatcacaatcacaacctttctgtattaaaaacagattgatgcccccttggtggtgtaacagaatgatgactaacataatcttcatttg |
39236080 |
T |
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| Q |
210 |
ttaacactggtgttcccaatccatcttcagtaccagctccaacatattgttgaactaccaacactgaagcaattgttgcaaaatcagatgatgctaacaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39236081 |
ttaacactggtgttcccaatccatcttcagtaccagctccaacatattgttgaactaccaacactgaagcaattgttgcaaaatcagatgatgctaacaa |
39236180 |
T |
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| Q |
310 |
atcaccaattgctcctaattcaggacactcactccagtcagttagccctgccgtcagtggcgatataact |
379 |
Q |
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| T |
39236181 |
atcaccaattgctcctaattcaggacactcactccagtcagttagccctgccgtcagcggtgatataact |
39236250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 248 - 375
Target Start/End: Original strand, 44054256 - 44054383
Alignment:
| Q |
248 |
ccaacatattgttgaactaccaacactgaagcaattgttgcaaaatcagatgatgctaacaaatcaccaattgctcctaattcaggacactcactccagt |
347 |
Q |
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| T |
44054256 |
ccaacatgttgttgaactaccaaaactgaagcacttgctgcaaaatctgaagctgctaataagtcaccaattgcacccatttcaggacactcactccaat |
44054355 |
T |
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| Q |
348 |
cagttagccctgccgtcagtggcgatat |
375 |
Q |
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| T |
44054356 |
cagtgagtcctgctgtcaatggtgatat |
44054383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 345
Target Start/End: Complemental strand, 2813391 - 2813317
Alignment:
| Q |
271 |
cactgaagcaattgttgcaaaatcagatgatgctaacaaatcaccaattgctcctaattcaggacactcactcca |
345 |
Q |
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|||||||||| ||||| |||| || || || ||||||||||| ||||| |||||||| || ||||| |||||||| |
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| T |
2813391 |
cactgaagcacttgtttcaaagtctgaagaagctaacaaatctccaatggctcctaactcgggacattcactcca |
2813317 |
T |
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