View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19655_high_10 (Length: 333)

Name: NF19655_high_10
Description: NF19655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19655_high_10
NF19655_high_10
[»] chr2 (4 HSPs)
chr2 (34-318)||(23348413-23348697)
chr2 (1-318)||(12742092-12742411)
chr2 (38-318)||(18354744-18355030)
chr2 (1-201)||(10328425-10328627)
[»] scaffold0596 (1 HSPs)
scaffold0596 (1-318)||(1058-1375)
[»] chr7 (3 HSPs)
chr7 (38-318)||(43070819-43071099)
chr7 (210-318)||(1262493-1262601)
chr7 (210-318)||(48849391-48849499)
[»] chr3 (7 HSPs)
chr3 (33-318)||(53972718-53973003)
chr3 (34-318)||(19881544-19881828)
chr3 (33-191)||(37982939-37983097)
chr3 (183-318)||(37982756-37982891)
chr3 (210-300)||(31685485-31685575)
chr3 (232-277)||(17682201-17682246)
chr3 (232-277)||(19766443-19766488)
[»] chr5 (4 HSPs)
chr5 (38-318)||(9044206-9044486)
chr5 (1-318)||(7472883-7473206)
chr5 (38-318)||(30441983-30442263)
chr5 (72-154)||(40163917-40163996)
[»] chr8 (3 HSPs)
chr8 (209-318)||(14677630-14677739)
chr8 (217-311)||(31100488-31100582)
chr8 (217-303)||(5658175-5658261)
[»] scaffold0035 (1 HSPs)
scaffold0035 (209-318)||(35465-35574)
[»] chr4 (1 HSPs)
chr4 (209-316)||(29862969-29863076)
[»] chr6 (3 HSPs)
chr6 (217-303)||(33045062-33045148)
chr6 (209-286)||(10092908-10092985)
chr6 (276-318)||(22000988-22001030)
[»] scaffold0045 (1 HSPs)
scaffold0045 (209-314)||(11242-11347)


Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 34 - 318
Target Start/End: Original strand, 23348413 - 23348697
Alignment:
Q  34 acacatgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat 133  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23348413 acacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat 23348512  T
Q  134 ataatggaataacaaagttagggaaaagttacaagaacaacgatttaggatatatatagtagcatcttcaacacacctggctaatacgatgccgcagacg 233  Q
     |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23348513 gtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtagcatcttcaacacacctggctgatacgatgccgcagacg 23348612  T
Q  234 acaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagagagcggcaac 318  Q
    |||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23348613 acaacggcgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacggagagagcggcaac 23348697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 12742411 - 12742092
Alignment:
Q  1 caatggacatattggtgtgtttgnnnnnnnnntacacat--gattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctattta 98  Q
    |||||||||||||||||||||||         |||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12742411 caatggacatattggtgtgtttgaaaaaaaaatacacatatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctattta 12742312  T
Q  99 aatatcatcaattcacttacaaacaaaccaaaaatataatggaataacaaagttagggaaaagttacaagaacaacgatttaggatatatatagtagcat 198  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12742311 aatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtagcat 12742212  T
Q  199 cttcaacacacctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcg 298  Q
    ||||||||||||| ||| ||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  12742211 cttcaacacaccttgctgatacgatgccgcagacgacaacgacgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcg 12742112  T
Q  299 gcgacagagagagcggcaac 318  Q
    ||| | ||||||||||||||    
T  12742111 gcggcggagagagcggcaac 12742092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 38 - 318
Target Start/End: Original strand, 18354744 - 18355030
Alignment:
Q  38 atgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatataa 137  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  18354744 atgattttaaagtatcaatcaatttattaagagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 18354843  T
Q  138 tggaataacaaagttagggaaaagttacaagaacaacgatttagg------atatatatagtagcatcttcaacacacctggctaatacgatgccgcaga 231  Q
    |||||||||||||||||||||||| |||| |||||||||||||||      |||||||||||||||||||||||||||||| || |||||| ||||||||    
T  18354844 tggaataacaaagttagggaaaagctacaggaacaacgatttaggatatatatatatatagtagcatcttcaacacacctgactgatacgacgccgcaga 18354943  T
Q  232 cgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagagagcggcaac 318  Q
    | |||||  ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  18354944 caacaacagcgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacggagagagcggcaac 18355030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 10328425 - 10328627
Alignment:
Q  1 caatggacatattggtgtgtttgnnnnnnnnntacacatgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaa 100  Q
    |||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10328425 caatggacatattggtgtgtttgaaaaaaaaatacacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaa 10328524  T
Q  101 tatcatcaattcacttacaaacaaaccaaaaatataatggaataacaaagttagggaaaagttacaagaacaacgatttagg--atatatatagtagcat 198  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||  ||||||||||||||||    
T  10328525 tatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagatacatgaacaacgatttaggatatatatatagtagcat 10328624  T
Q  199 ctt 201  Q
    |||    
T  10328625 ctt 10328627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 1375 - 1058
Alignment:
Q  1 caatggacatattggtgtgtttgnnnnnnnnntacacatgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaa 100  Q
    |||||||||||||||||||||||         |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1375 caatggacatattggtgtgtttgaaaaaaaaatacacatgattttaaaatatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaa 1276  T
Q  101 tatcatcaattcacttacaaacaaaccaaaaatataatggaataacaaagttagggaaaagttacaagaacaacgatttaggatatatatagtagcatct 200  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1275 tatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtagcatct 1176  T
Q  201 tcaacacacctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggc 300  Q
    ||||||||||||||| ||||||||||||||||||||||| |||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1175 tcaacacacctggctgatacgatgccgcagacgacaacggcgaaagtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggc 1076  T
Q  301 gacagagagagcggcaac 318  Q
    ||| ||||||||||||||    
T  1075 gacggagagagcggcaac 1058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 38 - 318
Target Start/End: Original strand, 43070819 - 43071099
Alignment:
Q  38 atgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatataa 137  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  43070819 atgattttaaagtatcaatcaatttattaagagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 43070918  T
Q  138 tggaataacaaagttagggaaaagttacaagaacaacgatttaggatatatatagtagcatcttcaacacacctggctaatacgatgccgcagacgacaa 237  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  43070919 tggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtagcatcttcaacacacctggctgatacgatgccgcagacgacaa 43071018  T
Q  238 cgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagagagcggcaac 318  Q
    || ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  43071019 cggcgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacggagagagcggcaac 43071099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 210 - 318
Target Start/End: Complemental strand, 1262601 - 1262493
Alignment:
Q  210 ctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagag 309  Q
    |||||| ||||||||||||| ||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  1262601 ctggctgatacgatgccgcatacgacaacggcgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacggagaa 1262502  T
Q  310 agcggcaac 318  Q
    |||||||||    
T  1262501 agcggcaac 1262493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 210 - 318
Target Start/End: Original strand, 48849391 - 48849499
Alignment:
Q  210 ctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagag 309  Q
    |||||| ||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||     
T  48849391 ctggctgatacgatgccgcagacgacaacggcgaaggtgatgtcggaatcgagagcattggtgaagggcgacgaaaggagagagctgcggcgacggagaa 48849490  T
Q  310 agcggcaac 318  Q
    |||||||||    
T  48849491 agcggcaac 48849499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 33 - 318
Target Start/End: Original strand, 53972718 - 53973003
Alignment:
Q  33 tacacatgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaa 132  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53972718 tacacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaa 53972817  T
Q  133 tataatggaataacaaagttagggaaaagttacaagaacaacgatttaggatatatatagtagcatcttcaacacacctggctaatacgatgccgcagac 232  Q
    | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  53972818 tgtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtagcatcttcaacacacttggctgatacgatgccgcagac 53972917  T
Q  233 gacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagagagcggcaac 318  Q
    ||||||| |||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  53972918 gacaacgacgaaagtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacggagagagcggcaac 53973003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 34 - 318
Target Start/End: Original strand, 19881544 - 19881828
Alignment:
Q  34 acacatgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat 133  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19881544 acacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat 19881643  T
Q  134 ataatggaataacaaagttagggaaaagttacaagaacaacgatttaggatatatatagtagcatcttcaacacacctggctaatacgatgccgcagacg 233  Q
     |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  19881644 gtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtagcatcttcaacacacctggctgatacgatgccgcagacg 19881743  T
Q  234 acaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagagagcggcaac 318  Q
    |||||| ||||||||| ||| ||||||||||||||||||||||| || |||||||||||||||||| ||| ||||||||||||||    
T  19881744 acaacggcgaaggtgatgtcggaatcgagagcattggtgaagggtgaggacaggagagagctgcggtgacggagagagcggcaac 19881828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 33 - 191
Target Start/End: Complemental strand, 37983097 - 37982939
Alignment:
Q  33 tacacatgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaa 132  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37983097 tacacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaa 37982998  T
Q  133 tataatggaataacaaagttagggaaaagttacaagaacaacgatttaggatatatata 191  Q
    | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37982997 tgtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatata 37982939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 183 - 318
Target Start/End: Complemental strand, 37982891 - 37982756
Alignment:
Q  183 atatatatagtagcatcttcaacacacctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacg 282  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||    
T  37982891 atatatatattagcatcttcaacacacctggctgatacgatgccgcagacgacaacgacgaaggtgatgtcggaatcgagagcattggtgaagggcgacg 37982792  T
Q  283 acaggagagagctgcggcgacagagagagcggcaac 318  Q
    | ||||||||||||||||||| ||||||||||||||    
T  37982791 ataggagagagctgcggcgacggagagagcggcaac 37982756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 210 - 300
Target Start/End: Complemental strand, 31685575 - 31685485
Alignment:
Q  210 ctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggc 300  Q
    |||||| ||||||||||||||||||||||| ||||||||| ||| ||||||| | ||||||||||||||||||||||||||||||||||||    
T  31685575 ctggctgatacgatgccgcagacgacaacggcgaaggtgatgtcggaatcgatatcattggtgaagggcgacgacaggagagagctgcggc 31685485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 17682246 - 17682201
Alignment:
Q  232 cgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaaggg 277  Q
    |||||||| | ||||||| ||| |||||||||||||||||||||||    
T  17682246 cgacaacggcaaaggtgatgtcggaatcgagagcattggtgaaggg 17682201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 19766488 - 19766443
Alignment:
Q  232 cgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaaggg 277  Q
    |||||||| ||||||||| ||| ||||| |||||||||||||||||    
T  19766488 cgacaacggcgaaggtgatgtcggaatctagagcattggtgaaggg 19766443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 38 - 318
Target Start/End: Complemental strand, 9044486 - 9044206
Alignment:
Q  38 atgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatataa 137  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  9044486 atgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 9044387  T
Q  138 tggaataacaaagttagggaaaagttacaagaacaacgatttaggatatatatagtagcatcttcaacacacctggctaatacgatgccgcagacgacaa 237  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||    
T  9044386 tggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtagcatcttcaacacacttggctgatacgatgctgcagacgacaa 9044287  T
Q  238 cgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagagagcggcaac 318  Q
    || ||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  9044286 cgacgaaggtgatgtcgaaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacggagagagcggcaac 9044206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 7472883 - 7473206
Alignment:
Q  1 caatggacatattggtgtgtttgnnnnnnnnntacacat--gattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctattta 98  Q
    |||||||||||||||||||||||         |||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7472883 caatggacatattggtgtgtttgaaaaaaaaatacacatatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctattta 7472982  T
Q  99 aatatcatcaattcacttacaaacaaaccaaaaatataatggaataacaaagttagggaaaagttacaagaacaacgatttagg----atatatatagta 194  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    ||||||||||||    
T  7472983 aatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatatatagta 7473082  T
Q  195 gcatcttcaacacacctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagc 294  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  7473083 gcatcttcaacacacctggctgatacgatgccgcagacgacaacggcgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagc 7473182  T
Q  295 tgcggcgacagagagagcggcaac 318  Q
    ||||||||| ||||||||| ||||    
T  7473183 tgcggcgacggagagagcgacaac 7473206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 38 - 318
Target Start/End: Original strand, 30441983 - 30442263
Alignment:
Q  38 atgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatataa 137  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  30441983 atgattttaaagtatcaatcaatttattaacaacataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 30442082  T
Q  138 tggaataacaaagttagggaaaagttacaagaacaacgatttaggatatatatagtagcatcttcaacacacctggctaatacgatgccgcagacgacaa 237  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||    
T  30442083 tggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtagcatcttcaacacatatggctgatacgatgccgcagacgacaa 30442182  T
Q  238 cgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagagagcggcaac 318  Q
    || | ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  30442183 cggccaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcaacggagagagcggcaac 30442263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 72 - 154
Target Start/End: Complemental strand, 40163996 - 40163917
Alignment:
Q  72 ataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatataatggaataacaaagttag 154  Q
    ||||||||| || ||||||||||| |||||||||   |||||| | ||||||||| ||| |||||||||||||||||||||||    
T  40163996 ataatacataattgtaaaatctatgtaaatatca---attcacatccaaacaaactaaatatataatggaataacaaagttag 40163917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 209 - 318
Target Start/End: Original strand, 14677630 - 14677739
Alignment:
Q  209 cctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagaga 308  Q
    ||||||| ||||||||| ||||||||||||| ||||||||| ||| ||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||    
T  14677630 cctggctgatacgatgctgcagacgacaacggcgaaggtgatgtcggaatcgagagcattggtgaagggtgacgataggagagagctgcggcgacggaga 14677729  T
Q  309 gagcggcaac 318  Q
    ||||||||||    
T  14677730 gagcggcaac 14677739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 217 - 311
Target Start/End: Original strand, 31100488 - 31100582
Alignment:
Q  217 atacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagagag 311  Q
    |||||||||| |||||||||||| ||||||||| ||  ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  31100488 atacgatgccacagacgacaacggcgaaggtgatgttggaatcgagagcattggtgaagggcgacgacaggagagagttgcggcgacggagagag 31100582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 217 - 303
Target Start/End: Complemental strand, 5658261 - 5658175
Alignment:
Q  217 atacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgac 303  Q
    |||||||||| |||||||||||| ||||||||| ||  ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5658261 atacgatgccacagacgacaacggcgaaggtgatgttggaatcaagagcattggtgaagggcgacgacaggagagagctgcggcgac 5658175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 209 - 318
Target Start/End: Complemental strand, 35574 - 35465
Alignment:
Q  209 cctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagaga 308  Q
    ||||||| ||||||||||||| ||||||||| ||||||||| ||||||||||||||||| ||| || |||||||||||||||||||||||||||| ||||    
T  35574 cctggctgatacgatgccgcaaacgacaacggcgaaggtgatgtcagaatcgagagcatcggtcaaaggcgacgacaggagagagctgcggcgacggaga 35475  T
Q  309 gagcggcaac 318  Q
    |||| |||||    
T  35474 gagcagcaac 35465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 209 - 316
Target Start/End: Original strand, 29862969 - 29863076
Alignment:
Q  209 cctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagaga 308  Q
    ||||||| ||||||||||||||| ||||||| | || |||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  29862969 cctggctgatacgatgccgcagatgacaacggcaaaagtgatgtcggaatcgagagcatcggtgaagggcgacgacaggagagagctgcggcgacggaga 29863068  T
Q  309 gagcggca 316  Q
    ||||||||    
T  29863069 gagcggca 29863076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 217 - 303
Target Start/End: Original strand, 33045062 - 33045148
Alignment:
Q  217 atacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgac 303  Q
    ||||||||||||||||||||||| ||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33045062 atacgatgccgcagacgacaacgacgaaggtgatgttggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgac 33045148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 209 - 286
Target Start/End: Complemental strand, 10092985 - 10092908
Alignment:
Q  209 cctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacag 286  Q
    ||||||| ||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||    
T  10092985 cctggctgatacgatgccgcagacgacaacgacgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacag 10092908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 276 - 318
Target Start/End: Original strand, 22000988 - 22001030
Alignment:
Q  276 ggcgacgacaggagagagctgcggcgacagagagagcggcaac 318  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  22000988 ggcgacgacaggagagagctgcggcgacggagagagcggcaac 22001030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 209 - 314
Target Start/End: Original strand, 11242 - 11347
Alignment:
Q  209 cctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagaga 308  Q
    ||||||| || | |||||||||||||||||| ||||||||| ||| || |||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  11242 cctggctgatgcaatgccgcagacgacaacggcgaaggtgatgtcggattcgagagcattggtgaagggcgacgacaagagagagctgcggcgacggaga 11341  T
Q  309 gagcgg 314  Q
    ||||||    
T  11342 gagcgg 11347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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