View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19655_high_16 (Length: 325)
Name: NF19655_high_16
Description: NF19655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19655_high_16 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 28 - 325
Target Start/End: Complemental strand, 36151176 - 36150879
Alignment:
| Q |
28 |
cagaatcttctggtgcaaaaatggttaaccctccggaacctgatggcgatgataccagctgtgagttgagttgattgattaattgtgttgttttgagaag |
127 |
Q |
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| T |
36151176 |
cagaatcttctggtgcaaaaatggttaacccaccggaacctgatggcgatgataccagctgcgagttgagttgattgattaattgtgttgttttgagaag |
36151077 |
T |
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| Q |
128 |
acggattagaacggagaaccttttggctttttgaagaatgttgattatgtcaatggtgggtccttttgggactgttatggtgggtgatggtgcaccagtt |
227 |
Q |
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| T |
36151076 |
acggattagaacggagaaccttttggctttttgaagaatgttgattatgtcaatggtgggtccttttgggactgttatggtgggtgatggtgcaccagct |
36150977 |
T |
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| Q |
228 |
ggtgttgttggaacaagtggaactgtgcttaatcctggtgatggcgctgttgctgttgttgctggtaatggtgttgatgctgttgttgatggtaaggg |
325 |
Q |
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| T |
36150976 |
ggtgttgttggaacaagtggaactgtgcttaatcctggtgatggcgctgttgctgttgttgctggtaatggtgttgatgctgttgttgatggtaaggg |
36150879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 28 - 325
Target Start/End: Complemental strand, 36154562 - 36154265
Alignment:
| Q |
28 |
cagaatcttctggtgcaaaaatggttaaccctccggaacctgatggcgatgataccagctgtgagttgagttgattgattaattgtgttgttttgagaag |
127 |
Q |
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| T |
36154562 |
cagaatcttctggtgcaaaaatggttaaccctccggaacctgatggcgatgataccagctgcgagttgagttgattgattaattgtgttgttttgagaag |
36154463 |
T |
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| Q |
128 |
acggattagaacggagaaccttttggctttttgaagaatgttgattatgtcaatggtgggtccttttgggactgttatggtgggtgatggtgcaccagtt |
227 |
Q |
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| T |
36154462 |
acggattagaacggagaaccttttggctttttgaagaatgttgattatgtcaatggtgggtccttttgggactgttatggtgggtgatggtgcaccagtt |
36154363 |
T |
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| Q |
228 |
ggtgttgttggaacaagtggaactgtgcttaatcctggtgatggcgctgttgctgttgttgctggtaatggtgttgatgctgttgttgatggtaaggg |
325 |
Q |
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| T |
36154362 |
ggtgttgttggaacaagcggaactgtacttaatcctggtgatggtgctgttgctgttgttgctggtaatggtggtgatgctgttgttgatggtaaggg |
36154265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 87 - 159
Target Start/End: Complemental strand, 5273616 - 5273544
Alignment:
| Q |
87 |
tgtgagttgagttgattgattaattgtgttgttttgagaagacggattagaacggagaaccttttggcttttt |
159 |
Q |
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| T |
5273616 |
tgtgagttgagttggtttattaactgagttgttttgagaagacgaatgagaactgagaatctttttgcttttt |
5273544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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