View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19655_high_7 (Length: 337)
Name: NF19655_high_7
Description: NF19655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19655_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 4 - 333
Target Start/End: Complemental strand, 180207 - 179877
Alignment:
| Q |
4 |
gcagtatcataggaagcaaaggagatgatgtcagcctctgtcatggaggagagaagaagattgatgattagctgatcaagagtgaaccactttgtgtatt |
103 |
Q |
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| T |
180207 |
gcagtttcataggaagcaaaggagatgatgtcagcctttgtcatggaggagagaagaagattgatgattagctgatcaagagtgaaccactttgtgtatt |
180108 |
T |
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| Q |
104 |
caggattgggagcatagacaccattgttgataatagtttctgtttgaattggtgtggttccgtctatgtgacccat-actccgataccagcaagcagggt |
202 |
Q |
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| T |
180107 |
caggattgggagcatagacaccgttgttgataatagtttctgtttgaattggtgtggttccgtctatgtgacccataacttcgataccagcaagcagggt |
180008 |
T |
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| Q |
203 |
agtgacttgacgtttccaagcacgaaaatttttgcgagacaatttgaacttgattgaggcatttagaataagatatgatttggtgttggaagggttggtg |
302 |
Q |
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| T |
180007 |
agtgacttgacgtttccaagcacgaaaatttttgctagacaatttgaacgtgattgaggcatttagaataagatatgatttggtgttggaagggttggtg |
179908 |
T |
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| Q |
303 |
gccatgttgttgaaaataggatcgtatggtg |
333 |
Q |
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| T |
179907 |
gccatgttgttgaaaataggatcttatggtg |
179877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 4 - 327
Target Start/End: Complemental strand, 1700591 - 1700270
Alignment:
| Q |
4 |
gcagtatcataggaagcaaaggagatgatgtcagcctctgtcatggaggagagaagaagattgatgattagctgatcaagagtgaaccactttgtgtatt |
103 |
Q |
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| T |
1700591 |
gcagtttcataggaagcaaaggagatgctgtcagcctctgtcatggaggagagaagaagattgatgattagctgatcaagagtgaaccactttgtgtaat |
1700492 |
T |
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| Q |
104 |
caggattgggagcatagacaccattgttgataatagtttctgtttgaattggtgtggttccgtctatgtgacccat-actccgataccagcaagcagggt |
202 |
Q |
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| T |
1700491 |
caggattgggagcagagacaccgttgttgataatagtttctgtttgaattggtgtggttccgtctatgtgacccataacttcgataccagcaagcagggt |
1700392 |
T |
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| Q |
203 |
agtgacttgacgtttccaagcacgaaaatttttgcgagacaatttgaacttgattgaggcatttagaataagatatgatttggtgttggaagggttggtg |
302 |
Q |
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| T |
1700391 |
agtgacttgacgtttccaagcacggaaatttttgcgagacagtttgaacgtgattgaggcatttagaataagagatgatttggtgttggaagggttggtg |
1700292 |
T |
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| Q |
303 |
gccatgttgttgaaaataggatcgt |
327 |
Q |
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|||| |||||||||||||||||| |
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| T |
1700291 |
gcca---tgttgaaaataggatcgt |
1700270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 5399360 - 5399261
Alignment:
| Q |
4 |
gcagtatcataggaagcaaaggagatgatgtcagcctctgtcatggaggagagaagaagattgatgattagctgatcaagagtgaaccactttgtgtatt |
103 |
Q |
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||||| |||||||| ||||| || || |||| || |||||||| ||||||| ||||||||||||||| || ||||||| ||||||||| |||||||||| |
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| T |
5399360 |
gcagtgtcataggaggcaaatgatatactgtctgcttctgtcatagaggagataagaagattgatgatgagttgatcaatagtgaaccaatttgtgtatt |
5399261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 3540357 - 3540258
Alignment:
| Q |
4 |
gcagtatcataggaagcaaaggagatgatgtcagcctctgtcatggaggagagaagaagattgatgattagctgatcaagagtgaaccactttgtgtatt |
103 |
Q |
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||||| |||||||| ||||| || || |||| || |||||||| |||||| ||||||||||||||| || || |||| ||||||||| |||||||||| |
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| T |
3540357 |
gcagtgtcataggaggcaaatgatatactgtctgcttctgtcataaaggagataagaagattgatgatgagttggtcaatagtgaaccaatttgtgtatt |
3540258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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