View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19655_high_8 (Length: 335)

Name: NF19655_high_8
Description: NF19655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19655_high_8
NF19655_high_8
[»] chr3 (2 HSPs)
chr3 (14-189)||(14426189-14426367)
chr3 (185-229)||(5634070-5634114)
[»] chr1 (2 HSPs)
chr1 (14-278)||(23221987-23222251)
chr1 (182-267)||(25131244-25131329)
[»] chr8 (1 HSPs)
chr8 (18-294)||(16053712-16053990)
[»] chr2 (4 HSPs)
chr2 (45-280)||(9501094-9501327)
chr2 (73-212)||(28279697-28279837)
chr2 (14-104)||(22389821-22389915)
chr2 (198-269)||(29709435-29709506)
[»] chr4 (1 HSPs)
chr4 (45-294)||(1697360-1697610)
[»] chr6 (2 HSPs)
chr6 (14-335)||(15577130-15577438)
chr6 (213-285)||(18388062-18388134)
[»] chr5 (2 HSPs)
chr5 (45-226)||(24840263-24840446)
chr5 (18-122)||(16604422-16604531)
[»] scaffold0043 (1 HSPs)
scaffold0043 (14-104)||(57547-57641)
[»] chr7 (2 HSPs)
chr7 (54-147)||(19709337-19709430)
chr7 (182-242)||(16166419-16166479)
[»] scaffold1429 (1 HSPs)
scaffold1429 (53-147)||(837-932)


Alignment Details
Target: chr3 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 14 - 189
Target Start/End: Complemental strand, 14426367 - 14426189
Alignment:
Q  14 attctccaagactaaaacaatttttt--agagattttgaaaaggaaagttatgcaat-catgtaaaaacaacacgcctagtcgtgagttagcaacaataa 110  Q
    ||||| ||||||||||||||||||||  |||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  14426367 attctacaagactaaaacaattttttttagagatttagaaaaggaaagttatgcaattcatgtaaaaacaacaagcctagtcgtgagttagcaacaataa 14426268  T
Q  111 aataaagaaattatgagattgagtggctatgtaaaataaataactgaaacttaaatgactttaaataaaaatatgggtt 189  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  14426267 aataaagaaattatgagattgagtggctatgtaaaataaatgactgaaacttaaatgacttaaaataaaaatatgggtt 14426189  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 5634070 - 5634114
Alignment:
Q  185 gggttgccttcctttcaacgtttgtttagcgtctcgagcttgacg 229  Q
    ||||||||||   ||||||| ||||||||||||||||||||||||    
T  5634070 gggttgccttttgttcaacgcttgtttagcgtctcgagcttgacg 5634114  T

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Target: chr1 (Bit Score: 126; Significance: 6e-65; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 14 - 278
Target Start/End: Complemental strand, 23222251 - 23221987
Alignment:
Q  14 attctccaagactaaaacaattttttagagattttgaaaaggaaagttatgcaat-catgtaaaaacaacacgcctagtcgtgagttagcaacaataaaa 112  Q
    |||| ||||| |||||||||  |||||||  ||||||||  ||||||| |||||| ||||| |||||||| | |||||||| ||||||| ||||||||||    
T  23222251 attcaccaaggctaaaacaaaattttagat-ttttgaaagagaaagttgtgcaattcatgttaaaacaacgcacctagtcgcgagttagaaacaataaaa 23222153  T
Q  113 taaagaaattatgagattgagtggctatgtaaaataaataactgaaacttaaatgactttaaataaaaatatgggttgccttcctttcaacgtttgttta 212  Q
     ||| |||||||||||| ||||||||||||||||||||| ||||||| |||||||| || |||||||||||||||||||||  | ||||||| |||||||    
T  23222152 gaaataaattatgagatggagtggctatgtaaaataaatgactgaaatttaaatgatttaaaataaaaatatgggttgcctcacattcaacgcttgttta 23222053  T
Q  213 gcgtctcgagcttgacgcacttgtctaaggtgaggctgggaaccccaaaccttcaggttccttgtc 278  Q
    | | |||||||||||| || ||||||||||||||  | ||||||||||||||||||||||||||||    
T  23222052 gagcctcgagcttgacacatttgtctaaggtgagcttaggaaccccaaaccttcaggttccttgtc 23221987  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 267
Target Start/End: Original strand, 25131244 - 25131329
Alignment:
Q  182 tatgggttgccttcctttcaacgtttgtttagcgtctcgagcttgacgcacttgtctaaggtgaggctgggaaccccaaaccttca 267  Q
    ||||||||| || || ||||||| ||||||||| ||| |||||||||||| || |||||  ||||  ||||| |||||||| ||||    
T  25131244 tatgggttgtctcccattcaacgcttgtttagcatcttgagcttgacgcatttatctaaactgagcttgggagccccaaactttca 25131329  T

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Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 16053712 - 16053990
Alignment:
Q  18 tccaagactaaaacaattttttagagatttt-gaaaaggaaagttatgcaatca-tgtaaaaacaacacgcctagtcgtgagttagcaacaataaaataa 115  Q
    ||||||||||||||||   ||| |||||||| ||||| || ||||||||||| | ||||||||||   ||||||||||  ||||||||||||||||| ||    
T  16053712 tccaagactaaaacaaaacttttgagatttttgaaaatgagagttatgcaattaatgtaaaaacattgcgcctagtcgcaagttagcaacaataaaagaa 16053811  T
Q  116 agaaattatgagattgagtggctatgtaaaataaataactgaaacttaaatgactttaaataaaaatatgggttgccttcctttcaacgtttgtttagcg 215  Q
    ||||||||||| || || |||||||||||||||||| | |  || ||||||||||  | ||||| |||||||||| ||||| ||||||| ||||||||||    
T  16053812 agaaattatgatatggaatggctatgtaaaataaattaatacaatttaaatgactggagataaacatatgggttgtcttccattcaacgcttgtttagcg 16053911  T
Q  216 tctcgagcttgacgcacttgtctaaggtgaggctgggaaccccaaaccttcaggttccttgtctttttcttcctcatct 294  Q
    ||||||| |||||||| |  | |||||||||  ||||||||| ||||||||||  |||||||||| |||||||||||||    
T  16053912 tctcgagtttgacgcattcatataaggtgagcttgggaaccctaaaccttcagtatccttgtcttcttcttcctcatct 16053990  T

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Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 45 - 280
Target Start/End: Complemental strand, 9501327 - 9501094
Alignment:
Q  45 ttttgaaaaggaaagttatgcaat-catgtaaaaacaacacgcctagtcgtgagttagcaacaataaaataaagaaattatgagattgagtggctatgta 143  Q
    |||| ||||||||||| ||||||| |||||||||||||| || ||||||| ||  |||||||| ||||| |||||||||||||||| |||||| ||||||    
T  9501327 ttttaaaaaggaaagtaatgcaattcatgtaaaaacaacgcgtctagtcgcgaagtagcaacattaaaagaaagaaattatgagatggagtggatatgta 9501228  T
Q  144 aaataaataactgaaacttaaatgact-ttaaataaaaatatgggttgccttcctttcaacgtttgtttagcgtctcgagcttgacgcacttgtctaagg 242  Q
        |||| | ||||| | ||||||||   ||||||||||||||||||||| || |||||||||||||||   ||||||||||||||||  ||||||||     
T  9501227 ----aaattattgaaattgaaatgactgaaaaataaaaatatgggttgcctcccattcaacgtttgtttaatatctcgagcttgacgcatgtgtctaagt 9501132  T
Q  243 tgaggctgggaaccccaaaccttcaggttccttgtctt 280  Q
    ||||  |||||||||| ||| |  ||||||| ||||||    
T  9501131 tgagcttgggaacccctaacatctaggttccatgtctt 9501094  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 73 - 212
Target Start/End: Original strand, 28279697 - 28279837
Alignment:
Q  73 taaaaacaacacgcctagtcgtgagttagcaacaataaaataaagaaattatgagattgagtggctatgtaaaataaataactgaaacttaaatgact-t 171  Q
    |||||||||| |||||||||| |||||| ||||| ||||| |||||| |||| |||||||||||||||||||||||| | | ||||| |||||| |||      
T  28279697 taaaaacaacgcgcctagtcgcgagttaacaacagtaaaagaaagaacttataagattgagtggctatgtaaaataagtgaatgaaatttaaattactga 28279796  T
Q  172 taaataaaaatatgggttgccttcctttcaacgtttgttta 212  Q
     |||| |||| ||||||| ||| |||| ||||| |||||||    
T  28279797 aaaatcaaaagatgggtttcctcccttccaacgcttgttta 28279837  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 22389821 - 22389915
Alignment:
Q  14 attctccaagactaaaacaattttttagagatttt--gaaaaggaaag-ttatgcaat-catgtaaaaacaacacgcctagtcgtgagttagcaa 104  Q
    ||||||| ||||||||| |||||||| ||||||||  ||||||||||| ||||||||| |||||||||||||| | |||||||||||||||||||    
T  22389821 attctccgagactaaaataatttttttgagatttttggaaaaggaaaggttatgcaattcatgtaaaaacaacgctcctagtcgtgagttagcaa 22389915  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 198 - 269
Target Start/End: Complemental strand, 29709506 - 29709435
Alignment:
Q  198 ttcaacgtttgtttagcgtctcgagcttgacgcacttgtctaaggtgaggctgggaaccccaaaccttcagg 269  Q
    ||||||||||||||||||||||||||||||| || |||||||||||| || ||||| | ||||| |||||||    
T  29709506 ttcaacgtttgtttagcgtctcgagcttgacacatttgtctaaggtgtggttgggagctccaaaacttcagg 29709435  T

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Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 45 - 294
Target Start/End: Original strand, 1697360 - 1697610
Alignment:
Q  45 ttttgaaaaggaaagttatgcaat-catgtaaaaacaacacgcctagtcgtgagttagcaacaataaaataaagaaattatgagattgagtggctatgta 143  Q
    |||||||| ||||||||||| ||| |||||||| ||||   || ||| || |||||||||||| ||||| ||||||||| |||||  ||||||||||| |    
T  1697360 ttttgaaagggaaagttatgaaattcatgtaaagacaatgtgcgtagccgcgagttagcaacagtaaaagaaagaaattgtgagaaagagtggctatgca 1697459  T
Q  144 aaataaataactgaaacttaaatgactttaaa-taaaaatatgggttgccttcctttcaacgtttgtttagcgtctcgagcttgacgcacttgtctaagg 242  Q
    ||| ||||   ||||| |||||| |||| ||| |||||||||||||||||| || ||||||  |||||||| ||||| |||||||||||  |||||| |     
T  1697460 aaagaaatggttgaaa-ttaaattacttgaaaataaaaatatgggttgcctcccattcaactcttgtttagagtctcaagcttgacgcatgtgtctatgt 1697558  T
Q  243 tgaggctgggaaccccaaaccttcaggttccttgtctttttcttcctcatct 294  Q
    ||||  | |||| |||||||||||| |||||||||||| ||| |||||||||    
T  1697559 tgagtttaggaatcccaaaccttcaagttccttgtcttcttcctcctcatct 1697610  T

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Target: chr6 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 14 - 335
Target Start/End: Original strand, 15577130 - 15577438
Alignment:
Q  14 attctccaagactaaaacaa-ttttttagagattttgaaaaggaaagttatgcaat-catgtaaaaacaacacgcctagtcgtgagttagcaacaataaa 111  Q
    |||||||||| ||||||||| |||||||    |||||||| | ||||||||||||| |||||||||| ||   ||||||||| |||||||||| |||||     
T  15577130 attctccaagtctaaaacaaattttttattatttttgaaaggaaaagttatgcaattcatgtaaaaataatgtgcctagtcgcgagttagcaataataag 15577229  T
Q  112 ataaagaaattatgagattgagtggctatgtaaaataaataactgaaacttaaatgactttaaataaaaatatgggttgccttcctttcaacgtttgttt 211  Q
    | ||| | |||||||||| |||  |||||| ||||||||| ||||||| |||||               ||||||||||||| || ||||||| ||||||    
T  15577230 agaaacatattatgagatggagctgctatgaaaaataaatgactgaaaattaaa---------------atatgggttgcctcccattcaacgcttgttt 15577314  T
Q  212 agcgtctcgagcttgacgcacttgtctaaggtgaggctgggaaccccaaaccttcaggttccttgtctttttcttcctcatctgaacagactcattaaga 311  Q
    ||| |||||| ||||||  | |||| |||||||||  || |||||||||||||||||||||||| |||| ||||||||| ||||||||  ||| || | |    
T  15577315 agcatctcgaacttgacttatttgtgtaaggtgagcttgagaaccccaaaccttcaggttccttctcttcttcttcctcgtctgaacaatctccttcata 15577414  T
Q  312 atctgtccatccgtagtcttcttc 335  Q
    ||||| |||| | |||||||||||    
T  15577415 atctgaccattcatagtcttcttc 15577438  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 285
Target Start/End: Complemental strand, 18388134 - 18388062
Alignment:
Q  213 gcgtctcgagcttgacgcacttgtctaaggtgaggctgggaaccccaaaccttcaggttccttgtctttttct 285  Q
    |||||||||||||||| ||  |||||||| ||||  |||||||||| | ||| |||||||| |||||| ||||    
T  18388134 gcgtctcgagcttgacacatgtgtctaagttgagcttgggaacccctatcctccaggttccatgtcttcttct 18388062  T

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Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 45 - 226
Target Start/End: Complemental strand, 24840446 - 24840263
Alignment:
Q  45 ttttgaaaaggaaagttatgcaatc-atgtaaaaacaacacgcctagtcgtgagttagcaacaataaaataaagaaattatgagattgagtggctatgta 143  Q
    ||||||||  ||||||||||||||  ||||||||||||| | |||||||| |||||| ||||| ||||  |||||||||||||| | || ||||||||||    
T  24840446 ttttgaaagagaaagttatgcaatttatgtaaaaacaacgcccctagtcgcgagttaccaacagtaaacgaaagaaattatgagctagaatggctatgta 24840347  T
Q  144 aaataaataactgaaacttaaatgactttaaat-aaaaatatgggttgccttcctttcaacgtttgtttagcgtctcgagcttg 226  Q
    |||||||| ||||||| | |||| |||  |||| ||||| ||||||| | | || || | || ||||||||||||| |||||||    
T  24840346 aaataaatgactgaaattaaaattactgaaaatgaaaaaaatgggtttcttcccatttagcgattgtttagcgtcttgagcttg 24840263  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 16604422 - 16604531
Alignment:
Q  18 tccaagactaaaacaattttttagagatttt--gaaaaggaaag-ttatgcaat-catgtaaaaacaacacgcctagtcgtgagttagc-aacaataaaa 112  Q
    |||||||||||||||| ||||| || |||||  ||||||||||| ||||||||| |||||||||||||| ||| |||||| |||||||| |||||||| |    
T  16604422 tccaagactaaaacaaattttttgacatttttggaaaaggaaaggttatgcaattcatgtaaaaacaacgcgcgtagtcgggagttagcaaacaataata 16604521  T
Q  113 taaagaaatt 122  Q
     |||||||||    
T  16604522 gaaagaaatt 16604531  T

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Target: scaffold0043 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 57641 - 57547
Alignment:
Q  14 attctccaagactaaaacaattttttagagatttt--gaaaaggaaag-ttatgcaat-catgtaaaaacaacacgcctagtcgtgagttagcaa 104  Q
    ||||||| ||||||| | |||||||| || |||||  ||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||    
T  57641 attctccgagactaacataatttttttgaaatttttggaaaaggaaaggttatgcaattcatgtaaaaacaacgcgcctagtcgtgagttagcaa 57547  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 54 - 147
Target Start/End: Complemental strand, 19709430 - 19709337
Alignment:
Q  54 ggaaagttatgcaat-catgtaaaaacaacacgcctagtcgtgagttagcaacaataaaataaagaaattatgagattgagtggctatgtaaaat 147  Q
    |||| |||||||||| ||||||||||||||  ||| ||||| |||||||||||||||||| ||||||||| | |||| || | ||||||||||||    
T  19709430 ggaaggttatgcaattcatgtaaaaacaacgagccaagtcgcgagttagcaacaataaaagaaagaaattgttagatggaat-gctatgtaaaat 19709337  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 16166479 - 16166419
Alignment:
Q  182 tatgggttgccttcctttcaacgtttgtttagcgtctcgagcttgacgcacttgtctaagg 242  Q
    |||||||||||| || ||||||| ||||||||||||||||| || ||||| ||||||||||    
T  16166479 tatgggttgcctcccattcaacgcttgtttagcgtctcgagtttaacgcaattgtctaagg 16166419  T

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Target: scaffold1429 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold1429
Description:

Target: scaffold1429; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 53 - 147
Target Start/End: Original strand, 837 - 932
Alignment:
Q  53 aggaaagttatgcaat-catgtaaaaacaacacgcctagtcgtgagttagc-aacaataaaataaagaaattatgagattgagtggctatgtaaaat 147  Q
    ||||| |||||||||| ||||||||||||||  ||||||| |||||||||| |||| ||||||||||||||| | ||||| | | ||||||||||||    
T  837 aggaaggttatgcaattcatgtaaaaacaacgtgcctagtagtgagttagcaaacagtaaaataaagaaattgttagatttaat-gctatgtaaaat 932  T

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