View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19655_low_2 (Length: 395)
Name: NF19655_low_2
Description: NF19655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19655_low_2 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 6e-87; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 188 - 395
Target Start/End: Complemental strand, 47309184 - 47308975
Alignment:
| Q |
188 |
caacgaaccacctaaattaatccatcctccacattattctcttattggacgtacaata---tagagcaacaataacagtagaatcacnnnnnnnttacac |
284 |
Q |
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| T |
47309184 |
caacgaaccacctaaattaatccatcctccacattattctcttattggacatacaataatatagagcaacaataacagtagaatcacaaaaaa-ttacac |
47309086 |
T |
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| Q |
285 |
atgtggaatatcagaacttgtgagaccagcccgagcttccattgcaatgaaaacagctacggagcatcgtcctctctagtccataaactgttccaaaagc |
384 |
Q |
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| T |
47309085 |
atgtggaatatcagaacttgtgagaccagcccgagcttccattgcaatgaaaacagctacggagcattgtcctctctagtccataaactgttccaaaagc |
47308986 |
T |
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| Q |
385 |
aaaatccttcc |
395 |
Q |
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||||||||||| |
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| T |
47308985 |
aaaatccttcc |
47308975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 47309373 - 47309232
Alignment:
| Q |
1 |
acaaaatgcttcgtgataaacaacatttgaggttgtagtgctatcaaagagagcaacaaaacgatcatcaaccgatgaaattataagaaacaaggagaat |
100 |
Q |
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| T |
47309373 |
acaaaatgcttcgtgataaacaacatttgaggttgtagtgctatcaaagagagcaacaaaacgatcatcaaccgatgaaattataagaaacaaggagaat |
47309274 |
T |
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| Q |
101 |
aatgagatattatcctcagatttagttcaaacttagttccac |
142 |
Q |
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| T |
47309273 |
aatgagatattatcctcagatttagttcaaacttagttccac |
47309232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 37
Target Start/End: Original strand, 24845838 - 24845866
Alignment:
| Q |
9 |
cttcgtgataaacaacatttgaggttgta |
37 |
Q |
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| T |
24845838 |
cttcgtgataaacaacatttgaggttgta |
24845866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 37
Target Start/End: Original strand, 8649796 - 8649824
Alignment:
| Q |
9 |
cttcgtgataaacaacatttgaggttgta |
37 |
Q |
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| T |
8649796 |
cttcgtgataaacaacatttgaggttgta |
8649824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 37
Target Start/End: Original strand, 8661603 - 8661631
Alignment:
| Q |
9 |
cttcgtgataaacaacatttgaggttgta |
37 |
Q |
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| T |
8661603 |
cttcgtgataaacaacatttgaggttgta |
8661631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 37
Target Start/End: Original strand, 53745455 - 53745483
Alignment:
| Q |
9 |
cttcgtgataaacaacatttgaggttgta |
37 |
Q |
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| T |
53745455 |
cttcgtgataaacaacatttgaggttgta |
53745483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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