View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19656_low_2 (Length: 564)

Name: NF19656_low_2
Description: NF19656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19656_low_2
NF19656_low_2
[»] chr2 (11 HSPs)
chr2 (284-549)||(34579274-34579539)
chr2 (284-549)||(34585023-34585288)
chr2 (5-226)||(34579618-34579835)
chr2 (5-226)||(34585367-34585584)
chr2 (286-388)||(34590048-34590150)
chr2 (66-134)||(15007018-15007088)
chr2 (66-165)||(37009582-37009683)
chr2 (66-139)||(40020176-40020250)
chr2 (66-165)||(11564391-11564492)
chr2 (66-165)||(33146085-33146186)
chr2 (521-549)||(34571836-34571864)
[»] scaffold0051 (1 HSPs)
scaffold0051 (64-165)||(11551-11653)
[»] chr4 (5 HSPs)
chr4 (67-163)||(46076402-46076499)
chr4 (66-139)||(46490613-46490686)
chr4 (77-140)||(10037203-10037267)
chr4 (66-107)||(47930670-47930711)
chr4 (66-106)||(9785179-9785219)
[»] scaffold0102 (1 HSPs)
scaffold0102 (66-139)||(26430-26504)
[»] chr3 (5 HSPs)
chr3 (66-139)||(9830354-9830429)
chr3 (66-165)||(3090341-3090441)
chr3 (66-165)||(33978609-33978709)
chr3 (66-136)||(30127675-30127746)
chr3 (66-139)||(17058385-17058458)
[»] chr7 (3 HSPs)
chr7 (65-139)||(23232942-23233017)
chr7 (66-139)||(33869870-33869944)
chr7 (66-165)||(38987803-38987904)
[»] chr6 (5 HSPs)
chr6 (66-165)||(13489517-13489618)
chr6 (66-119)||(28713484-28713537)
chr6 (67-165)||(21802528-21802628)
chr6 (66-164)||(28494159-28494259)
chr6 (66-164)||(29806568-29806668)
[»] chr5 (5 HSPs)
chr5 (66-165)||(31850055-31850156)
chr5 (66-106)||(42598434-42598474)
chr5 (66-136)||(6844364-6844434)
chr5 (66-100)||(6123848-6123882)
chr5 (66-139)||(38955483-38955557)
[»] scaffold0068 (1 HSPs)
scaffold0068 (67-165)||(59311-59411)
[»] chr8 (5 HSPs)
chr8 (66-106)||(40299510-40299550)
chr8 (66-136)||(34678678-34678749)
chr8 (66-129)||(35366916-35366979)
chr8 (66-139)||(40791126-40791200)
chr8 (66-106)||(39998958-39998998)
[»] chr1 (5 HSPs)
chr1 (288-410)||(7595109-7595232)
chr1 (67-165)||(19071762-19071861)
chr1 (67-165)||(19119652-19119751)
chr1 (66-165)||(4007603-4007704)
chr1 (66-140)||(35383515-35383590)
[»] scaffold0189 (1 HSPs)
scaffold0189 (66-165)||(11340-11441)
[»] scaffold0136 (1 HSPs)
scaffold0136 (66-99)||(736-769)


Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-104; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 284 - 549
Target Start/End: Complemental strand, 34579539 - 34579274
Alignment:
Q  284 tgagccacgttggcaatcctcaacatcacaaaacaaccaataagatacaagcacatggattacaattaatatttctaattaaaaaa-taatcataaccgt 382  Q
    ||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  34579539 tgagccacgttggcaatcctcaacaccacaaaacaaccaacaagagacaagcacatggatcacaattaatatttctaattaaaaaaataatcataaccgt 34579440  T
Q  383 tgaagcatgcaacgtccaagatcactctaatctcaattaaaccgacctaatcctattttttccactcctatataaacacttcctttcatacacaatattc 482  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||    
T  34579439 tgaagcaagcaacgtccaagatctctctaatctcaattaaaccgacctaatcctattttctccactcctatataaacacttcctttcatacacaatcttc 34579340  T
Q  483 attcctttcttctttcaatatagtcttcttcnnnnnnncgattcaatggcgcgtacaaagcaaactg 549  Q
    | |||||||||||||||| ||||||||||||       |||||||||||||||||||||||||||||    
T  34579339 aatcctttcttctttcaaaatagtcttcttc-ttttttcgattcaatggcgcgtacaaagcaaactg 34579274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 284 - 549
Target Start/End: Complemental strand, 34585288 - 34585023
Alignment:
Q  284 tgagccacgttggcaatcctcaacatcacaaaacaaccaataagatacaagcacatggattacaattaatatttctaattaaaaaa-taatcataaccgt 382  Q
    ||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  34585288 tgagccacgttggcaatcctcaacaccacaaaacaaccaacaagagacaagcacatggatcacaattaatatttctaattaaaaaaataatcataaccgt 34585189  T
Q  383 tgaagcatgcaacgtccaagatcactctaatctcaattaaaccgacctaatcctattttttccactcctatataaacacttcctttcatacacaatattc 482  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||    
T  34585188 tgaagcaagcaacgtccaagatctctctaatctcaattaaaccgacctaatcctattttctccactcctatataaacacttcctttcatacacaatcttc 34585089  T
Q  483 attcctttcttctttcaatatagtcttcttcnnnnnnncgattcaatggcgcgtacaaagcaaactg 549  Q
    | |||||||||||||||| ||||||||||||       |||||||||||||||||||||||||||||    
T  34585088 aatcctttcttctttcaaaatagtcttcttc-ttttttcgattcaatggcgcgtacaaagcaaactg 34585023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 5 - 226
Target Start/End: Complemental strand, 34579835 - 34579618
Alignment:
Q  5 ggtagattatactgaatttgactaaaaaatatgctaagaataacagactgtcatcaaggtaatatttaattattaagggatgaagttttaattcaaacat 104  Q
    |||| ||| ||||||| ||||  |||||||||||||||||||||  ||  |||||||||||||||||||||| ||| ||||||||||||  ||||| |||    
T  34579835 ggtaaattctactgaaattgataaaaaaatatgctaagaataacgtacaatcatcaaggtaatatttaattactaaaggatgaagttttgtttcaagcat 34579736  T
Q  105 ctcatggagaagggggtataagttttacttttcaaaataggcggtgtatattttaacataaagaggagaagaatattatgtaatttaagatatcttttaa 204  Q
    ||||| |||| |||||||||||||||||||||||||||| |  ||||||||||||||||||  | ||| ||||||  |||||||||||||||||||||||    
T  34579735 ctcatagagaggggggtataagttttacttttcaaaataagtagtgtatattttaacataa--aagaggagaata--atgtaatttaagatatcttttaa 34579640  T
Q  205 aggagggaattgtaatttaccg 226  Q
    |||| |||||||||||||||||    
T  34579639 aggaaggaattgtaatttaccg 34579618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 5 - 226
Target Start/End: Complemental strand, 34585584 - 34585367
Alignment:
Q  5 ggtagattatactgaatttgactaaaaaatatgctaagaataacagactgtcatcaaggtaatatttaattattaagggatgaagttttaattcaaacat 104  Q
    |||| ||| ||||||| ||||  |||||||||||||||||||||  ||  |||||||||||||||||||||| ||| ||||||||||||  ||||| |||    
T  34585584 ggtaaattctactgaaattgataaaaaaatatgctaagaataacgtacaatcatcaaggtaatatttaattactaaaggatgaagttttgtttcaagcat 34585485  T
Q  105 ctcatggagaagggggtataagttttacttttcaaaataggcggtgtatattttaacataaagaggagaagaatattatgtaatttaagatatcttttaa 204  Q
    ||||| |||| |||||||||||||||||||||||||||| |  ||||||||||||||||||  | ||| ||||||  |||||||||||||||||||||||    
T  34585484 ctcatagagaggggggtataagttttacttttcaaaataagtagtgtatattttaacataa--aagaggagaata--atgtaatttaagatatcttttaa 34585389  T
Q  205 aggagggaattgtaatttaccg 226  Q
    |||| |||||||||||||||||    
T  34585388 aggaaggaattgtaatttaccg 34585367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 286 - 388
Target Start/End: Complemental strand, 34590150 - 34590048
Alignment:
Q  286 agccacgttggcaatcctcaacatcacaaaacaaccaataagatacaagcacatggattacaattaatatttctaattaaaaaataatcataaccgttga 385  Q
    |||||| |||||||||||| | | |||||||||||||||| || |||||||| | ||| | |||||||||||||||||||||||| ||||  ||||||||    
T  34590150 agccacattggcaatcctcgaaaccacaaaacaaccaataggaaacaagcacgtagatcagaattaatatttctaattaaaaaatcatcaccaccgttga 34590051  T
Q  386 agc 388  Q
    |||    
T  34590050 agc 34590048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 66 - 134
Target Start/End: Original strand, 15007018 - 15007088
Alignment:
Q  66 atatttaattattaagggatgaagttttaattcaaacatctcatggagaagggg--gtataagttttactt 134  Q
    |||||||||||||||||||||||||| |||||||||||||| || | |||||||  |||||| ||||||||    
T  15007018 atatttaattattaagggatgaagttgtaattcaaacatcttatagggaagggggagtataaattttactt 15007088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 66 - 165
Target Start/End: Original strand, 37009582 - 37009683
Alignment:
Q  66 atatttaattattaagggatgaagttttaattcaaacatctcat-ggagaagggggtataagttttacttttcaaaataggcg-gtgtatattttaacat 163  Q
    ||||||||||||||||||| || ||| |||||||||||||| || || || ||| || ||| |||||||||||||   ||| | ||||||||||||||||    
T  37009582 atatttaattattaagggaagaggttgtaattcaaacatcttataggggaggggagtgtaaattttacttttcaagggaggggagtgtatattttaacat 37009681  T
Q  164 aa 165  Q
    ||    
T  37009682 aa 37009683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 40020250 - 40020176
Alignment:
Q  66 atatttaattattaagggatgaagttttaattcaaacatctcatggagaagggg-gtataagttttacttttcaa 139  Q
    ||||||||||||||||||| | ||||  |||||||||||||||  | ||||||| |||||| ||||| |||||||    
T  40020250 atatttaattattaagggagggagttgcaattcaaacatctcaaagggaaggggagtataaattttatttttcaa 40020176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 165
Target Start/End: Original strand, 11564391 - 11564492
Alignment:
Q  66 atatttaattattaagggatgaagttttaattcaaacatctcat-ggagaagggggtataagttttacttttcaaaataggcg-gtgtatattttaacat 163  Q
    ||||||||||||||||||| || | | |||||||| ||||| || || || | | ||||||||||||||||||||   ||| | ||||||||||||||||    
T  11564391 atatttaattattaagggaggaggatgtaattcaagcatcttataggggatgagagtataagttttacttttcaagggaggagagtgtatattttaacat 11564490  T
Q  164 aa 165  Q
    ||    
T  11564491 aa 11564492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 165
Target Start/End: Complemental strand, 33146186 - 33146085
Alignment:
Q  66 atatttaattattaagggatgaagttttaattcaaacatctcat-ggagaagggggtataagttttacttttcaaaataggcg-gtgtatattttaacat 163  Q
    ||||||||||||||||||| |  ||| |||||||| ||||| || || || |||||||||| |||| ||||||||   ||| | ||||||||||||||||    
T  33146186 atatttaattattaagggagggggttgtaattcaagcatcttataggggaggggggtataaattttccttttcaagggaggggagtgtatattttaacat 33146087  T
Q  164 aa 165  Q
    ||    
T  33146086 aa 33146085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 521 - 549
Target Start/End: Complemental strand, 34571864 - 34571836
Alignment:
Q  521 cgattcaatggcgcgtacaaagcaaactg 549  Q
    |||||||||||||||||||||||||||||    
T  34571864 cgattcaatggcgcgtacaaagcaaactg 34571836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 64 - 165
Target Start/End: Original strand, 11551 - 11653
Alignment:
Q  64 taatatttaattattaagggatgaagttttaattcaaacatctcatggagaagggggtataagttttacttttcaaaataggcg-gtgtatattttaaca 162  Q
    |||||||||||||||||||||||| ||| |||||||| ||||| || | | ||||||||||| ||||||||||||| | ||| | ||||||| |||||||    
T  11551 taatatttaattattaagggatgaggttgtaattcaagcatcttataggggagggggtataaattttacttttcaagagaggggagtgtataatttaaca 11650  T
Q  163 taa 165  Q
    |||    
T  11651 taa 11653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 67 - 163
Target Start/End: Complemental strand, 46076499 - 46076402
Alignment:
Q  67 tatttaattattaagggatgaagttttaattcaaacatctcatggagaag-ggggtataagttttacttttcaaaataggcggtgtatattttaacat 163  Q
    ||||||||||||||||||||  ||| |||||||| |||||||| | |||| || |||||| ||||||||||||||| | |  ||||||||||||||||    
T  46076499 tatttaattattaagggatgtggttgtaattcaatcatctcatagggaagaggagtataaattttacttttcaaaagatgtagtgtatattttaacat 46076402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 66 - 139
Target Start/End: Original strand, 46490613 - 46490686
Alignment:
Q  66 atatttaattattaagggatgaagttttaattcaaacatctcatggagaagggggtataagttttacttttcaa 139  Q
    |||||||||||| ||||||   |||| |||||||| |||||||||| || ||| |||||||||||| |||||||    
T  46490613 atatttaattatcaagggagagagttgtaattcaagcatctcatggggaggggagtataagttttatttttcaa 46490686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 140
Target Start/End: Original strand, 10037203 - 10037267
Alignment:
Q  77 ttaagggatgaagttttaattcaaacatctcatggagaagggg-gtataagttttacttttcaaa 140  Q
    |||||||| || ||| ||||||||| ||||||| || |||||| |||||||||||||||||||||    
T  10037203 ttaagggaggatgttgtaattcaaatatctcatagaaaaggggagtataagttttacttttcaaa 10037267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 107
Target Start/End: Complemental strand, 47930711 - 47930670
Alignment:
Q  66 atatttaattattaagggatgaagttttaattcaaacatctc 107  Q
    |||||||||||||||||||||| ||| |||||||| ||||||    
T  47930711 atatttaattattaagggatgaggttgtaattcaagcatctc 47930670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 9785179 - 9785219
Alignment:
Q  66 atatttaattattaagggatgaagttttaattcaaacatct 106  Q
    ||||||||||||||||||| || ||| ||||||||||||||    
T  9785179 atatttaattattaagggaggaggttgtaattcaaacatct 9785219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 26504 - 26430
Alignment:
Q  66 atatttaattattaagggatgaagttttaattcaaacatctcat-ggagaagggggtataagttttacttttcaa 139  Q
    |||||||||||||||||||||| ||| |||||||| ||||| || ||||||||| |||| | |||||||||||||    
T  26504 atatttaattattaagggatgatgttgtaattcaagcatcttataggagaagggagtatcaattttacttttcaa 26430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 9830429 - 9830354
Alignment:
Q  66 atatttaattattaagggatgaagttttaattcaaacatctcatggagaa--gggggtataagttttacttttcaa 139  Q
    |||||||||||||||||||||| ||| |||||||| |||||||||| | |  |||||||||| ||||| |||||||    
T  9830429 atatttaattattaagggatgaggttgtaattcaagcatctcatgggggagggggggtataacttttatttttcaa 9830354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 165
Target Start/End: Original strand, 3090341 - 3090441
Alignment:
Q  66 atatttaattattaagggatgaagttttaattcaaacatctcatggagaagggggtataagttttacttttcaaaataggcg-gtgtatattttaacata 164  Q
    ||||||||||||||||||| |  ||| |||||||| ||||| || | | ||||||||||| |||| ||||||||   ||| | |||||||||||||||||    
T  3090341 atatttaattattaagggagggggttgtaattcaagcatcttataggggagggggtataaattttccttttcaagggaggggagtgtatattttaacata 3090440  T
Q  165 a 165  Q
    |    
T  3090441 a 3090441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 165
Target Start/End: Complemental strand, 33978709 - 33978609
Alignment:
Q  66 atatttaattattaagggatgaagttttaattcaaacatctcat-ggagaagggggtataagttttacttttcaaaataggcggtgtatattttaacata 164  Q
    ||||||||||||||||||| |  ||| |||||||||||||| || || || | | |||||| ||||||||||||||  ||| | | ||||||||||||||    
T  33978709 atatttaattattaagggagggggttgtaattcaaacatcttataggggaggagagtataaattttacttttcaaaggaggggatatatattttaacata 33978610  T
Q  165 a 165  Q
    |    
T  33978609 a 33978609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 30127746 - 30127675
Alignment:
Q  66 atatttaattattaagggatgaagttttaattcaaacatctcatggagaagggg-gtataagttttactttt 136  Q
    ||||||||| | ||||||| | |||| ||||||||||||||||| ||| ||||| |||||| ||||||||||    
T  30127746 atatttaataaataagggagggagttgtaattcaaacatctcatagaggaggggagtataaattttactttt 30127675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 139
Target Start/End: Original strand, 17058385 - 17058458
Alignment:
Q  66 atatttaattattaagggatgaagttttaattcaaacatctcatggagaagggggtataagttttacttttcaa 139  Q
    |||||||||||||||| || |  ||| |||||||| |||||||||| || | | |||||||||||| |||||||    
T  17058385 atatttaattattaagagaggcggttgtaattcaagcatctcatggggaggcgagtataagttttatttttcaa 17058458  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 65 - 139
Target Start/End: Complemental strand, 23233017 - 23232942
Alignment:
Q  65 aatatttaattattaagggatgaagttttaattcaaacatctcatggagaagggg-gtataagttttacttttcaa 139  Q
    |||||||||||||| |||||||| ||| |||||||| ||||| || ||| ||||| |||||| |||||||||||||    
T  23233017 aatatttaattattgagggatgaggttgtaattcaagcatcttatagaggaggggagtataaattttacttttcaa 23232942  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 66 - 139
Target Start/End: Original strand, 33869870 - 33869944
Alignment:
Q  66 atatttaattattaagggatgaagttttaattcaaacatctcat-ggagaagggggtataagttttacttttcaa 139  Q
    |||||||| |||||||||| || ||| |||||||||||||| ||  |||| ||| |||||| |||||||||||||    
T  33869870 atatttaactattaagggaggaggttgtaattcaaacatcttataagagaggggagtataaattttacttttcaa 33869944  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 165
Target Start/End: Complemental strand, 38987904 - 38987803
Alignment:
Q  66 atatttaattattaagggatgaagttttaattcaaacatctcat-ggagaagggggtataagttttacttttcaaaatag-gcggtgtatattttaacat 163  Q
    ||||||||||||||||||| |  ||| |||||||||||||| || || || ||| || ||| ||||||||||||| | || |  ||||||||||||||||    
T  38987904 atatttaattattaagggagggggttgtaattcaaacatcttataggggaggggagtgtaaattttacttttcaagagagtggagtgtatattttaacat 38987805  T
Q  164 aa 165  Q
    ||    
T  38987804 aa 38987803  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 165
Target Start/End: Complemental strand, 13489618 - 13489517
Alignment:
Q  66 atatttaattattaagggatgaagttttaattcaaacatctcat---ggagaagggggtataagttttacttttcaaaataggcg-gtgtatattttaac 161  Q
    ||||||||||||||||||| ||| || |||||||||||||||||   ||||||  | |||||| ||||||| ||||||||| | | || |||||||||||    
T  13489618 atatttaattattaagggaggaatttgtaattcaaacatctcataagggagaa--gagtataaattttactattcaaaatatgagagtatatattttaac 13489521  T
Q  162 ataa 165  Q
    ||||    
T  13489520 ataa 13489517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 28713484 - 28713537
Alignment:
Q  66 atatttaattattaagggatgaagttttaattcaaacatctcatggagaagggg 119  Q
    |||||||||||||||||||||| ||| |||||||||||||| || ||| |||||    
T  28713484 atatttaattattaagggatgaggttgtaattcaaacatcttatagaggagggg 28713537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 67 - 165
Target Start/End: Original strand, 21802528 - 21802628
Alignment:
Q  67 tatttaattattaagggatgaagttttaattcaaacatctcatggagaagggg-gtataagttttacttttcaaaataggcg-gtgtatattttaacata 164  Q
    |||||||||||||||||| |  ||| |||||||| ||||| || ||| ||||| |||||| |||||||||||||   ||| | |||||||||||||||||    
T  21802528 tatttaattattaagggagggggttgtaattcaagcatcttatagaggaggggagtataaattttacttttcaagggaggggagtgtatattttaacata 21802627  T
Q  165 a 165  Q
    |    
T  21802628 a 21802628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 66 - 164
Target Start/End: Complemental strand, 28494259 - 28494159
Alignment:
Q  66 atatttaattattaagggatgaagttttaattcaaacatctcat-ggagaagggggtataagttttacttttcaaaataggcgg-tgtatattttaacat 163  Q
    |||||||||||||||| || |||||| |||||||| ||||| || || || | | |||||| |||||||||||||   ||| || |||||||||||||||    
T  28494259 atatttaattattaagagaggaagttgtaattcaagcatcttataggggatgagagtataaattttacttttcaagggaggaggatgtatattttaacat 28494160  T
Q  164 a 164  Q
    |    
T  28494159 a 28494159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 66 - 164
Target Start/End: Complemental strand, 29806668 - 29806568
Alignment:
Q  66 atatttaattattaagggatgaagttttaattcaaacatctcat-ggagaagggggtataagttttacttttcaaaataggcgg-tgtatattttaacat 163  Q
    |||||||||||||||| || |||||| |||||||| ||||| || || || | | |||||| |||||||||||||   ||| || |||||||||||||||    
T  29806668 atatttaattattaagagaggaagttgtaattcaagcatcttataggggatgagagtataaattttacttttcaagggaggaggatgtatattttaacat 29806569  T
Q  164 a 164  Q
    |    
T  29806568 a 29806568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 66 - 165
Target Start/End: Complemental strand, 31850156 - 31850055
Alignment:
Q  66 atatttaattattaagggatgaagttttaattcaaacatctcatggagaagggg-gtataagttttacttttcaaaatagg-cggtgtatattttaacat 163  Q
    ||||||||||||||||||| | ||||  |||||||||||||||  | ||||||| |||||| ||||| ||||||||  |||   ||||||||||||||||    
T  31850156 atatttaattattaagggagggagttggaattcaaacatctcaaagggaaggggagtataaattttatttttcaaaggaggaaagtgtatattttaacat 31850057  T
Q  164 aa 165  Q
    ||    
T  31850056 aa 31850055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 42598474 - 42598434
Alignment:
Q  66 atatttaattattaagggatgaagttttaattcaaacatct 106  Q
    ||||||||||||||||||| |||||| ||||||||||||||    
T  42598474 atatttaattattaagggaggaagttgtaattcaaacatct 42598434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 6844434 - 6844364
Alignment:
Q  66 atatttaattattaagggatgaagttttaattcaaacatctcat-ggagaagggggtataagttttactttt 136  Q
    ||||||||||| ||||||| |||||| |||||||||||||| || |||| ||||||||||| |||| |||||    
T  6844434 atatttaattaataagggaggaagttgtaattcaaacatcttataggag-agggggtataaatttttctttt 6844364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 66 - 100
Target Start/End: Original strand, 6123848 - 6123882
Alignment:
Q  66 atatttaattattaagggatgaagttttaattcaa 100  Q
    |||||||||||||||||||||||||| ||||||||    
T  6123848 atatttaattattaagggatgaagttgtaattcaa 6123882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 66 - 139
Target Start/End: Original strand, 38955483 - 38955557
Alignment:
Q  66 atatttaattattaagggatgaagttttaattcaaacatctcatg-gagaagggggtataagttttacttttcaa 139  Q
    |||||||||||||||||||    ||| |||||||||||||| ||| | |||||| |||||| |||||||||||||    
T  38955483 atatttaattattaagggagagtgttgtaattcaaacatcttatgagggaagggagtataaattttacttttcaa 38955557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 67 - 165
Target Start/End: Complemental strand, 59411 - 59311
Alignment:
Q  67 tatttaattattaagggatgaagttttaattcaaacatctcatggagaagggg-gtataagttttacttttcaaaataggcg-gtgtatattttaacata 164  Q
    |||||||||||||||||| |  ||| |||||||| ||||| || ||| ||||| |||||| |||||||||||||   ||| | |||||||||||||||||    
T  59411 tatttaattattaagggagggggttgtaattcaagcatcttatagaggaggggagtataaattttacttttcaagggaggggagtgtatattttaacata 59312  T
Q  165 a 165  Q
    |    
T  59311 a 59311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 40299510 - 40299550
Alignment:
Q  66 atatttaattattaagggatgaagttttaattcaaacatct 106  Q
    |||||||||||||||||||||||||| |||||||| |||||    
T  40299510 atatttaattattaagggatgaagttgtaattcaagcatct 40299550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 34678749 - 34678678
Alignment:
Q  66 atatttaattattaagggatgaagttttaattcaaacatctcat-ggagaagggggtataagttttactttt 136  Q
    |||||||||||||||||||||| ||| |||||||| ||||| || ||||| |||  ||||| ||||||||||    
T  34678749 atatttaattattaagggatgacgttgtaattcaagcatcttataggagaggggattataaattttactttt 34678678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 129
Target Start/End: Original strand, 35366916 - 35366979
Alignment:
Q  66 atatttaattattaagggatgaagttttaattcaaacatctcatggagaagggggtataagttt 129  Q
    |||||||||||||||||||   |||| ||||||||||||||||||| || ||| ||| ||||||    
T  35366916 atatttaattattaagggagtgagttgtaattcaaacatctcatggggaggggagtacaagttt 35366979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 40791200 - 40791126
Alignment:
Q  66 atatttaattattaagggatgaagttttaattcaaacatctcat-ggagaagggggtataagttttacttttcaa 139  Q
    ||||||||||||||||||| |  ||| |||||||||||||| ||  | |||||| |||||| |||||||||||||    
T  40791200 atatttaattattaagggagggggttgtaattcaaacatcttataagggaagggagtataaattttacttttcaa 40791126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 39998958 - 39998998
Alignment:
Q  66 atatttaattattaagggatgaagttttaattcaaacatct 106  Q
    |||||||||||||||||||||| ||| |||||||| |||||    
T  39998958 atatttaattattaagggatgaggttgtaattcaagcatct 39998998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 410
Target Start/End: Complemental strand, 7595232 - 7595109
Alignment:
Q  288 ccacgttggcaatcctcaacatcacaaaacaaccaataagatacaagcacatggattacaattaatatttctaattaaaaaa-taatcataaccgttgaa 386  Q
    ||||| ||||||||| |||| ||| ||| |||||||||| | |||| |||| ||||  || |||||||||  | |||||||| | ||||| |||||||||    
T  7595232 ccacgctggcaatccgcaacttcataaaccaaccaataataaacaaccacacggatcgcacttaatattttcacttaaaaaactcatcattaccgttgaa 7595133  T
Q  387 gcatgcaacgtccaagatcactct 410  Q
    |||| ||| ||||| |||| ||||    
T  7595132 gcattcaaagtccacgatctctct 7595109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 165
Target Start/End: Complemental strand, 19071861 - 19071762
Alignment:
Q  67 tatttaattattaagggatgaagttttaattcaaacatctcatggagaagggg-gtataagttttacttttcaaaataggcggtgtatattttaacataa 165  Q
    |||||||||||||||||| |  ||| |||||||| ||||| || ||| ||||| |||||| ||||||||||||    |||  ||||||||||||||||||    
T  19071861 tatttaattattaagggaggtggttgtaattcaagcatcttatagaggaggggagtataaattttacttttcacgggagggagtgtatattttaacataa 19071762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 165
Target Start/End: Complemental strand, 19119751 - 19119652
Alignment:
Q  67 tatttaattattaagggatgaagttttaattcaaacatctcatggagaagggg-gtataagttttacttttcaaaataggcggtgtatattttaacataa 165  Q
    |||||||||||||||||| |  ||| |||||||| ||||| || ||| ||||| |||||| ||||||||||||    |||  ||||||||||||||||||    
T  19119751 tatttaattattaagggaggtggttgtaattcaagcatcttatagaggaggggagtataaattttacttttcacgggagggagtgtatattttaacataa 19119652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 165
Target Start/End: Complemental strand, 4007704 - 4007603
Alignment:
Q  66 atatttaattattaagggatgaagttttaattcaaacatctcatggagaagggg-gtataagttttacttttcaaaatag-gcggtgtatattttaacat 163  Q
    ||||||||||||||||||| |  | | |||||||| ||||| || | |||| || |||||| ||||||||||||||  || | |||||||||||||||||    
T  4007704 atatttaattattaagggagggggatgtaattcaagcatcttatagggaagaggagtataaattttacttttcaaaggagaggggtgtatattttaacat 4007605  T
Q  164 aa 165  Q
    ||    
T  4007604 aa 4007603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 140
Target Start/End: Original strand, 35383515 - 35383590
Alignment:
Q  66 atatttaattattaagggatgaagttttaattcaaacatctcatggagaaggggg--tataagttttacttttcaaa 140  Q
    ||||||||||||||||| | |||||| |||||||||||| |||| | ||| ||||  | ||||||||||||||||||    
T  35383515 atatttaattattaaggaa-gaagttgtaattcaaacatttcatagggaaaggggagtgtaagttttacttttcaaa 35383590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 165
Target Start/End: Complemental strand, 11441 - 11340
Alignment:
Q  66 atatttaattattaagggatgaagttttaattcaaacatctcat-ggagaagggggtataagttttacttttcaaaataggcg-gtgtatattttaacat 163  Q
    ||||||||||||||||||| |  ||| |||||||| ||||| || || |||||| || ||| |||||||||||||   ||| | ||||||||||||||||    
T  11441 atatttaattattaagggagggggttgtaattcaagcatcttataggggaagggagtgtaaattttacttttcaagggaggggagtgtatattttaacat 11342  T
Q  164 aa 165  Q
    ||    
T  11341 aa 11340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 99
Target Start/End: Original strand, 736 - 769
Alignment:
Q  66 atatttaattattaagggatgaagttttaattca 99  Q
    |||||||||||||||||||||||||| |||||||    
T  736 atatttaattattaagggatgaagttgtaattca 769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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