View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19656_low_6 (Length: 264)
Name: NF19656_low_6
Description: NF19656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19656_low_6 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 49170851 - 49170588
Alignment:
| Q |
1 |
tttctataacagaggctctcctatatttcgagacttaatcaaccttcaattaagcatgttttactttcaccattgggatcatgtaatggaagtgcttcag |
100 |
Q |
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| T |
49170851 |
tttctataacagaggctctcctatatttcgagacttaatcaaccttcaattaagcatgttttactttcaccattgggatcatgtaatggaagtgcttcag |
49170752 |
T |
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| Q |
101 |
cattgccccaagcttcaaattcttcttattctgaaggtttcttatgtttgtggattgattttgttccttctttactttgactgtagttcacaaatcttat |
200 |
Q |
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| T |
49170751 |
cattgccccaagcttcaaattcttcttattctgaaggtttcttatgtttgtggattgtttttgttccttctttactttgactgtagttcacaaatcttat |
49170652 |
T |
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| Q |
201 |
ttttgtatatgttttgcagttatcagaggacaaaataaactggaaatacccaaattttgttcct |
264 |
Q |
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| T |
49170651 |
ttttgtatatgttttgcagttatcagaggacaaaataaactggaaatacccaaattttgttcct |
49170588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 264
Target Start/End: Original strand, 49179290 - 49179538
Alignment:
| Q |
16 |
ctctcctatatttcgagacttaatcaaccttcaattaagcatgttttactttcaccattgggatcatgtaatggaagtgcttcagcattgccccaagctt |
115 |
Q |
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| T |
49179290 |
ctctcctatatttcgaaacctaatcctccttcaattatgcatgtataactttcatcactgggatcatgtaatggaagtgcttcagcattgccctaatatt |
49179389 |
T |
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| Q |
116 |
caaattcttcttattctgaaggtttcttatgtttgtggattgattttgttccttctttactttgactgtagttcacaaatcttatttttgtatatgtttt |
215 |
Q |
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| T |
49179390 |
caagttctcagaattaataaggtttcttatgtttgtggattgtttttgttccttctttacttcgactgtatttcacaaatcttatttttgtatatgtttt |
49179489 |
T |
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| Q |
216 |
gcagttatcagaggacaaaataaactggaaatacccaaattttgttcct |
264 |
Q |
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| T |
49179490 |
gcagctgtcacccgacaatattaattggaaatacccaaattttgttcct |
49179538 |
T |
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