View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19657_high_10 (Length: 349)
Name: NF19657_high_10
Description: NF19657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19657_high_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 339
Target Start/End: Complemental strand, 7464906 - 7464581
Alignment:
| Q |
17 |
accatgtactatgctaaacataacgtggattgtgtcccaagaccgcttctnnnnnnntcatcatgtaggaaatttatgacttcgaaaattctttttacta |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7464906 |
accatgtactatgctaaacataacgtggattgtgtcccaagaccgcttctaaaaaaatcctcatgtaggaaatttatgacttcgaaaattctttttacta |
7464807 |
T |
|
| Q |
117 |
tagtatccagattggtcataaacttccaaccttgtttccccaacattgtcacattcttgttagttta-tgnnnnnnnnataaaaaattaagctttacttt |
215 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
7464806 |
tagtatccaggttggtcataaacttccaaccttgtttccccaacattgtcacattcttgttagtttatttttttttttataaaaaattaagctttacttt |
7464707 |
T |
|
| Q |
216 |
aca--ttttttattaagggcttctctattagcttctatataaaattgaataatgaagattacaaatagttgctagtaacagtaaaattatttaaaaacag |
313 |
Q |
| |
|
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7464706 |
acattttttttatctagggcttctctattagcttctatataaaattgaataatgaagattacaaatagttgctagtaacagtaaaattatttaaaaacat |
7464607 |
T |
|
| Q |
314 |
ccaaacaaaggcatgtgccaattcat |
339 |
Q |
| |
|
||||||||||||||||||| |||||| |
|
|
| T |
7464606 |
ccaaacaaaggcatgtgcccattcat |
7464581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 50316249 - 50316297
Alignment:
| Q |
116 |
atagtatccagattggtcataaacttccaaccttgtttccccaacattg |
164 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||| |||| |||||||| |
|
|
| T |
50316249 |
atagtatccagcttggtcataaatttccaaccttgattcctcaacattg |
50316297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 10873939 - 10873975
Alignment:
| Q |
128 |
ttggtcataaacttccaaccttgtttccccaacattg |
164 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
10873939 |
ttggtcatgaactgccaaccttgtttccccaacattg |
10873975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University