View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19657_high_2 (Length: 537)
Name: NF19657_high_2
Description: NF19657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19657_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 10 - 316
Target Start/End: Complemental strand, 11591151 - 11590845
Alignment:
| Q |
10 |
agaagaaggaagaggaagagaagatgtaacaacaactacagaacgtagcagaacagaagagcatcaaaattcacctgatcctnnnnnnncatctacaact |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11591151 |
agaagaaggaagaggaagagaagatgtaacaacaactacagaacgtagcagaacagaagagcatcaaaattcacctgatcctaaaaaaacatctacaact |
11591052 |
T |
|
| Q |
110 |
accactgttgctgcagaaggaaccgaatctcaaacacaaaggaaagagcatgatgatgctgttagagcaaagataatgaagcttaataataaactgaaaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11591051 |
accactgttgctgcagaaggaaccgaatctcaaacacaaaggaaagagcatgatgatgctgttagagcaaagataatgaagcttaataataaactgaaaa |
11590952 |
T |
|
| Q |
210 |
aactgaattcatattcttcatttctgaacatcttcaatctcatgtctcttacttggcatctggtttatttggctcaaaatgttcatcacagttgctaatt |
309 |
Q |
| |
|
||||||||||||||||||| |||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11590951 |
aactgaattcatattcttcttttctgaatatcctcaatctaatgtctcttacttggcatctggtttatttggctcaaaatgttcatcagagttgctaatt |
11590852 |
T |
|
| Q |
310 |
aatcaga |
316 |
Q |
| |
|
||||||| |
|
|
| T |
11590851 |
aatcaga |
11590845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 10 - 316
Target Start/End: Original strand, 11646516 - 11646822
Alignment:
| Q |
10 |
agaagaaggaagaggaagagaagatgtaacaacaactacagaacgtagcagaacagaagagcatcaaaattcacctgatcctnnnnnnncatctacaact |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11646516 |
agaagaaggaagaggaagagaagatgtaacaacaactacagaacgtagcagaacagaagagcatcaaaattcacctgatcctaaaaaaacatctacaact |
11646615 |
T |
|
| Q |
110 |
accactgttgctgcagaaggaaccgaatctcaaacacaaaggaaagagcatgatgatgctgttagagcaaagataatgaagcttaataataaactgaaaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11646616 |
accactgttgctgcagaaggaaccgaatctcaaacacaaaggaaagagcatgatgatgctgttagagcaaagataatgaagcttaataataaactgaaaa |
11646715 |
T |
|
| Q |
210 |
aactgaattcatattcttcatttctgaacatcttcaatctcatgtctcttacttggcatctggtttatttggctcaaaatgttcatcacagttgctaatt |
309 |
Q |
| |
|
|||||||||| |||||||| |||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11646716 |
aactgaattcgtattcttcttttctgaatatcctcaatctgatgtctcttacttggcatctggtttatttggctcaaaatgttcatcagagttgctaatt |
11646815 |
T |
|
| Q |
310 |
aatcaga |
316 |
Q |
| |
|
||||||| |
|
|
| T |
11646816 |
aatcaga |
11646822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 383 - 503
Target Start/End: Original strand, 11646889 - 11647012
Alignment:
| Q |
383 |
atacatgcaatgaactgttgtatttagatttgtatctttctggtttgttt--agttggaactc--aaggtttatgattagacatgtgtactgtatatttt |
478 |
Q |
| |
|
||||||||| ||| |||| ||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11646889 |
atacatgcagtga-ctgtagtatttagatttgtatctttctggtttgttttaagttgggactccaaaggtttatgattagacatatgtactgtatatttt |
11646987 |
T |
|
| Q |
479 |
agtttgtatgatcattttgttttgg |
503 |
Q |
| |
|
|||||||||||||||||||| |||| |
|
|
| T |
11646988 |
agtttgtatgatcattttgtcttgg |
11647012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 383 - 501
Target Start/End: Complemental strand, 11590778 - 11590659
Alignment:
| Q |
383 |
atacatgcaatgaactgttgtatttagatttgtatctttctggtttgttt--agttggaactc--aaggtttatgattagacatgtgtactgtatatttt |
478 |
Q |
| |
|
||||||||| ||| |||| ||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
11590778 |
atacatgcagtga-ctgtagtatttagatttgtatctttctggtttgttttaagttgggactccaaaggtttatgattagacatgtgtagtgtatatttt |
11590680 |
T |
|
| Q |
479 |
agtttgtatgatcattttgtttt |
501 |
Q |
| |
|
||||||||| |||||||||||| |
|
|
| T |
11590679 |
agtttgtat--tcattttgtttt |
11590659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 383 - 503
Target Start/End: Original strand, 41833878 - 41834001
Alignment:
| Q |
383 |
atacatgcaatgaactgttgtatttagatttgtatctttctggtttgttt--agttggaactc--aaggtttatgattagacatgtgtactgtatatttt |
478 |
Q |
| |
|
||||||||| ||| |||| ||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
41833878 |
atacatgcagtga-ctgtagtatttagatttgtatctttctggtttgttttaagttgggactccaaaggtttatgattagacatatgtactgtatatttt |
41833976 |
T |
|
| Q |
479 |
agtttgtatgatcattttgttttgg |
503 |
Q |
| |
|
|||||||||||||||||||| |||| |
|
|
| T |
41833977 |
agtttgtatgatcattttgtcttgg |
41834001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 251 - 316
Target Start/End: Original strand, 41833746 - 41833811
Alignment:
| Q |
251 |
atgtctcttacttggcatctggtttatttggctcaaaatgttcatcacagttgctaattaatcaga |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
41833746 |
atgtctcttacttggcatctggtttatttggctcaaaatgttcatcagagttgctaattaatcaga |
41833811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University