View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19657_high_4 (Length: 469)
Name: NF19657_high_4
Description: NF19657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19657_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Original strand, 5774330 - 5774767
Alignment:
| Q |
1 |
aaaaatcagagatgaagcacatgtgcgtgtgcagaaatttttcaaatgcctaggtgaaatactattatatatataactttactcattcgattagttacat |
100 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5774330 |
aaaaatcagagatgaagcacatgtgtgtgtgcagaaatttttcaaatgcctaggtgaaatactattatata----actttactcattcgattagttacat |
5774425 |
T |
|
| Q |
101 |
tctaaataacacaaaatttccacaannnnnnnn-ataactgacctgagtttctttaacagtgtatctctcaagtacggttttcttctcattgtcagtcag |
199 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5774426 |
tctaaataacacaaaatttccacaattcctttttataactgacctgagtttctttaacagtgtatctctcaagtacggttttcttctcattgtcagtcag |
5774525 |
T |
|
| Q |
200 |
cagctgatgttctggcacaagcttgtgatatcttacattaaccagcaattcagcctcctgcaagcacgcacacactaacaacagttacctcaaccataaa |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5774526 |
cagctgatgttctggcacaagcttgtgatatcttacattaaccagcaattcagcctcctgcaagcacgcatacactaacaacagttacctcaaccataaa |
5774625 |
T |
|
| Q |
300 |
caaccaccacagaatttgattgatcgatcgatcgaatgatgaattacctgaaaaacttccaaatgatatttggagtcgaactgagagatactgttccatg |
399 |
Q |
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|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
5774626 |
caaccaccacagaatttgattgattgatcgat----tgatgaattacctgaaaaacttccaaatgaaatttggagtcgaactgagagatactgttccatg |
5774721 |
T |
|
| Q |
400 |
ccatgttagtaaggctggtctggcaaacgatgatggccctgtagac |
445 |
Q |
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| T |
5774722 |
ccatgttagtaaggctggtctggcaaacgatgatggccctgtagac |
5774767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 80 - 445
Target Start/End: Original strand, 5768137 - 5768487
Alignment:
| Q |
80 |
tactcattcgattagttacattctaaataacacaaaatttccacaannnnnnnnataactgacctgagtttctttaacagtgtatctctcaagtacggtt |
179 |
Q |
| |
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|||||||||||||||| |||||||||||||||||| |||| ||| |||||||||||||||||||||||| ||||||||||| |||| |||| |
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| T |
5768137 |
tactcattcgattagtcacattctaaataacacaa--tttcatcaattttatttataactgacctgagtttctttaacggtgtatctctcgagtaaggtt |
5768234 |
T |
|
| Q |
180 |
ttcttctcattgtcagtcagcagctgatgttctggcacaagcttgtgatatcttacattaaccagcaattcagcctcctgcaagcacgcacacactaaca |
279 |
Q |
| |
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|||||||||||||| ||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||| ||||| ||||||||| |
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| T |
5768235 |
ttcttctcattgtcggtcagcacctgatgttctggcacaagctcgtgatatcttacgttaaccagcaattcagcctccttcaagaacgcatacactaaca |
5768334 |
T |
|
| Q |
280 |
acagttacctcaaccataaacaaccaccacagaatttgattgatcgatcgatcgaatgatgaattacctgaaaaacttccaaatgatatttggagtcgaa |
379 |
Q |
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|| |||||||||||||| ||||||||||||| |||||||||||| ||| ||| |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5768335 |
acggttacctcaaccattaacaaccaccacaaaatttgattgattgatggat----tgatgaattacctgaaaaacttccaaatgaaatttggagtcgat |
5768430 |
T |
|
| Q |
380 |
ctgagagatactgttccatgccatgttagtaaggctggtctggcaaacgatgatggccctgtagac |
445 |
Q |
| |
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| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
5768431 |
ttcagaga---------gtgccatgttagtaaggctggtctggcaaacgatgatggctctgtagac |
5768487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 137 - 258
Target Start/End: Complemental strand, 465800 - 465679
Alignment:
| Q |
137 |
actgacctgagtttctttaacagtgtatctctcaagtacggttttcttctcattgtcagtcagcagctgatgttctggcacaagcttgtgatatcttaca |
236 |
Q |
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||||||||||||||| || ||||||||||||||||| | |||||||||||| ||||| | || | ||||||||| ||||||||| || | | ||| | |
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| T |
465800 |
actgacctgagtttccttgacagtgtatctctcaagcaaggttttcttctcggtgtcattgagaatctgatgttcaggcacaagcacatgctcttttata |
465701 |
T |
|
| Q |
237 |
ttaaccagcaattcagcctcct |
258 |
Q |
| |
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||||||||||| || ||||||| |
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| T |
465700 |
ttaaccagcaactctgcctcct |
465679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 405 - 445
Target Start/End: Original strand, 5775102 - 5775142
Alignment:
| Q |
405 |
ttagtaaggctggtctggcaaacgatgatggccctgtagac |
445 |
Q |
| |
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||||||||||||||||||||||||| |||||| |||||||| |
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| T |
5775102 |
ttagtaaggctggtctggcaaacgacgatggctctgtagac |
5775142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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