View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19657_high_5 (Length: 432)
Name: NF19657_high_5
Description: NF19657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19657_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 16 - 416
Target Start/End: Original strand, 32214319 - 32214723
Alignment:
| Q |
16 |
ataaaatgagggtaagcaaaatcaagtttattgatgatacaaaacatgacaaaaatacattaatttggttcatacattaatttttatttcagattattga |
115 |
Q |
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| T |
32214319 |
ataaaatgagggtaagcaaaatcaagtttattgatgatacaaaacatgacaaaaatacattaatttggttcatacattaatttttatttcagattattga |
32214418 |
T |
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| Q |
116 |
aaaatctgtcagaaacttggt----cataatccacttgtatgatggttttgcagtgacaaattgattacggctaaacaagcttcataatcaaacacaaac |
211 |
Q |
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| T |
32214419 |
aaaatctgtcagaaacttggtgtatcataatccacttgtatgatggttttgcagtgacaaattgattacggctaaacaagcatcataatcaaacacaaac |
32214518 |
T |
|
| Q |
212 |
tacctccaatagtcagttagaaaaatgacaaatctcacctgaggcacgcatggaacataatcattcattaaacacactagtaagtagtaactgaaagcac |
311 |
Q |
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| T |
32214519 |
tacctccaacagtcagttagaaaaaagacaaatctcacctgaggcacgcatggaacataatcattcattaaacacactagtaagtagtaactgaaagcac |
32214618 |
T |
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| Q |
312 |
aaaactgaaatatgttaaagattaaacgaagcaacaaaataatgaaatatatatacacaatgccttggaaatttttatcaagagctgaaaattaactgta |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32214619 |
aaaactgaaatatgttaaagattaaacgaagcaacaaaataatgaaatatatatacaaaatgccttggaaatttttatcaagagctgaaaattaactgta |
32214718 |
T |
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| Q |
412 |
attag |
416 |
Q |
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| T |
32214719 |
attag |
32214723 |
T |
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