View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19657_low_1 (Length: 785)
Name: NF19657_low_1
Description: NF19657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19657_low_1 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 686; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 686; E-Value: 0
Query Start/End: Original strand, 14 - 785
Target Start/End: Original strand, 7947414 - 7948185
Alignment:
| Q |
14 |
tgatatgaaatcaatggccgagatcaattaatacatgtaaacacattctttttctattgcagtagatcagatcccgcttagaggtgaaagttgttgatat |
113 |
Q |
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| T |
7947414 |
tgatctgaaatcaatgaccgagatcaattaatacatgtaaacacatgctttttctattgcagtagatcggatcccgcttagaggtgaaagttgttgatat |
7947513 |
T |
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| Q |
114 |
catccctgaggatcttgtagctgtaaccaggaattctgttgaattgattactttcataatctacttctgtaacagaacatatttttcggatgaacctatt |
213 |
Q |
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| T |
7947514 |
catccctgaggatcttgtagctgtaaccaggaattctgttgaattgattactttcataatctacttctgtaacagaacatatttttcggatgaacctatt |
7947613 |
T |
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| Q |
214 |
tgttgaacttctttgcttccttttcttccaggttgttggcaaaaaccagaaactaggcttctttgctttctccatgtctacaagatgttgctgaggtttc |
313 |
Q |
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| T |
7947614 |
tgttgaacttctttgcttccttttcttccaggttgttggcaaaaaccagaaactaggcttctttgctttctccatgtctacaagatgttgctgaggtttc |
7947713 |
T |
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| Q |
314 |
tgtgaaattcctcttatgtctaactcaaacttagtgaaatattcaatttcctttctcactagtgatccaatagtgccccttgtgcctatagcaacaggtg |
413 |
Q |
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| T |
7947714 |
tgtgaaattcctcttatgtctaactcaaacttagtgaaatattcaatttcctttctcactaatgatccaatagtgccccttgtgcctatagcaacaggtg |
7947813 |
T |
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| Q |
414 |
cagccatttcacatggacttgtgccaatgaattatatggcactactctttatagtgcacgaggcttctagttaaagaaagtaagggtcatggttcttaat |
513 |
Q |
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| T |
7947814 |
cagccatttcacatggacttatgccaatgaattatatggcactactctttatagtgcacgaggcttctagttgaagaaagtaagggtcatggttcttaat |
7947913 |
T |
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| Q |
514 |
tttcaattaggaggagcatcnnnnnnnnnnnctttattaagctgtagtatatgattaaatgctttatgaaaagcatatgcatggaatttaacaaaattga |
613 |
Q |
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| T |
7947914 |
tttcaattaggaggagcatctatttttttttctttattaaactgtagtatatgattaaatgctttatgaaaagcatatgcatggaatttaacaaaattga |
7948013 |
T |
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| Q |
614 |
aactttaaaaagttgaaatgagttggtttatggacatcatactttacactttttgacaccatgtttgtannnnnnnaagaaactattaaacatagaatgt |
713 |
Q |
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| T |
7948014 |
aactttaaaaagttgaaatgagttggtttatggacatcatactttacactttttgacaccatgtttgtatttttttaagaaactattaaacatagaatgt |
7948113 |
T |
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| Q |
714 |
ttatcttattgacaataacatatttagagacattaacatcacaaaacatgtgtagctagctatgaatgaaat |
785 |
Q |
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| T |
7948114 |
ttatcttattgacaataacatatttagagacattaacatcacaaaacatgtgtagctagctatgaatgaaat |
7948185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 330 - 408
Target Start/End: Complemental strand, 55046971 - 55046893
Alignment:
| Q |
330 |
tgtctaactcaaacttagtgaaatattcaatttcctttctcactagtgatccaatagtgccccttgtgcctatagcaac |
408 |
Q |
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| T |
55046971 |
tgtctaactcaactttagtgaagtattcaatttcctttctgactagagatcctattgtgcctcttgtgcctatagcaac |
55046893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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