View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19657_low_13 (Length: 263)
Name: NF19657_low_13
Description: NF19657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19657_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 23662593 - 23662833
Alignment:
| Q |
1 |
gacagttgaattttgcgaataaatagcaagtatttgaaaaaatataagtctgtgttgcatgaaattaaaatagacaaggagtaatttcaaatgcaaaatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
23662593 |
gacagttgaattttgcgaataaatagcaagtatttgaaaaaatataagtctgtgttgcatgaaattaaaatagacaaggaataatttcaaatgcaaaatc |
23662692 |
T |
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| Q |
101 |
caaacatggcattaaaaaataagtctccaaagcattgttgaaattacaacaaacatttttatgttacaaataaagcttagaagaaaatggacattgtctt |
200 |
Q |
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|||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
23662693 |
caaatatggcattaaaaaataaatctccaacgcattgttgaaattacaacaaacattgttaagttacaaataaagcttagaagaaaatggacattgtctt |
23662792 |
T |
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| Q |
201 |
gttacaattcttttccatgacaaagccaaaaattacagagttaaatc |
247 |
Q |
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| T |
23662793 |
g------ttcttttccatgacaaagccaaaaattacagagttaaatc |
23662833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 23795995 - 23795755
Alignment:
| Q |
1 |
gacagttgaattttgcgaataaatagcaagtatttgaaaaaatataagtctgtgttgcatgaaattaaaatagacaaggagtaatttcaaatgcaaaatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
23795995 |
gacagttgaattttgcgaataaatagcaagtatttgaaaaaatataagtctgtgttgcatgaaattaaaatagacaaggaataatttcaaatgcaaaatc |
23795896 |
T |
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| Q |
101 |
caaacatggcattaaaaaataagtctccaaagcattgttgaaattacaacaaacatttttatgttacaaataaagcttagaagaaaatggacattgtctt |
200 |
Q |
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|||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
23795895 |
caaatatggcattaaaaaataaatctccaacgcattgttgaaattacaacaaacattgttaagttacaaataaagcttagaagaaaatggacattgtctt |
23795796 |
T |
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| Q |
201 |
gttacaattcttttccatgacaaagccaaaaattacagagttaaatc |
247 |
Q |
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| |||||||||||||||||||||||||||||||||||||||| |
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| T |
23795795 |
g------ttcttttccatgacaaagccaaaaattacagagttaaatc |
23795755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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