View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19657_low_16 (Length: 255)
Name: NF19657_low_16
Description: NF19657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19657_low_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 10 - 241
Target Start/End: Original strand, 10788818 - 10789049
Alignment:
| Q |
10 |
atcaaaccttcaaacacactcccaaacctttgggatatccacaaatccaatcaccatcttcacctctaaacacttctccggacccgcatttgcaccttct |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10788818 |
atcaaaccttcaaacacactcccaaacctttgggatatccacaaatccaatcaccatcttcacctctaaacacttctccggacccgcatttgcaccttct |
10788917 |
T |
|
| Q |
110 |
ttaaggcaccatccgtatcaagtctaaatgtttttacattactcgatttaaaatatgaaatttgtgtatgtctattataacagattttaagtagttggtt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10788918 |
ttaaggcaccatccgtatcaagtctaaatgtttttacattactcgatttaaaatatgaaatttgtgtatggctattataacagattttaagtagttggtt |
10789017 |
T |
|
| Q |
210 |
agttggacaacgattgtattttattaaaaaat |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
10789018 |
agttggacaacgattgtattttattaaaaaat |
10789049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 43473420 - 43473473
Alignment:
| Q |
30 |
cccaaacctttgggatatccacaaatccaatcaccatcttcacctctaaacact |
83 |
Q |
| |
|
|||||||||||| | | ||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
43473420 |
cccaaacctttgaaaaaaccacatatccaagcaccatcttcacctctaaacact |
43473473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University