View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19657_low_17 (Length: 243)
Name: NF19657_low_17
Description: NF19657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19657_low_17 |
 | |
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| [»] scaffold0586 (1 HSPs) |
| | |
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Alignment Details
Target: scaffold0586 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: scaffold0586
Description:
Target: scaffold0586; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 16 - 224
Target Start/End: Complemental strand, 3286 - 3079
Alignment:
| Q |
16 |
ataattctacgaaaatggacttctctaattaaacttctttcataaaaatcccatgacatttttcacttttttgaacgcttacttaactcaaggtagcata |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3286 |
ataattctacgaaaatggacttctctaattaaacttctttcataaaaatcccatgacctttttcacttttttgaacgcttacttaactcaaggtagcata |
3187 |
T |
|
| Q |
116 |
acacaattgtcatcaacataaagtaattcaacatctccatatatatcataaacattgctataannnnnnnncctcctttcacgtatttccatcaaatgtg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
3186 |
acacaattgtcatcaacataaagtaattcaacatctccatatatatcataaacattgctataa-tttttttcttcctttcacgtatttccatcaaatgtg |
3088 |
T |
|
| Q |
216 |
tcatgatta |
224 |
Q |
| |
|
||||||||| |
|
|
| T |
3087 |
tcatgatta |
3079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 32716745 - 32716952
Alignment:
| Q |
16 |
ataattctacgaaaatggacttctctaattaaacttctttcataaaaatcccatgacatttttcacttttttgaacgcttacttaactcaaggtagcata |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
32716745 |
ataattctacgaaaatggacttctctaattaaacttctttcataaaaatcccatgacctttttcgcttttttgaacgcttacttaactcaaggtagcata |
32716844 |
T |
|
| Q |
116 |
acacaattgtcatcaacataaagtaattcaacatctccatatatatcataaacattgctataannnnnnnncctcctttcacgtatttccatcaaatgtg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
32716845 |
acacaattgtcatcaacataaagtaattcaacatctccatatatatcataaacattgctataa-tttttttcttcctttcacgtatttccatcaaatgtg |
32716943 |
T |
|
| Q |
216 |
tcatgatta |
224 |
Q |
| |
|
||||||||| |
|
|
| T |
32716944 |
tcatgatta |
32716952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 16 - 224
Target Start/End: Complemental strand, 10638866 - 10638659
Alignment:
| Q |
16 |
ataattctacgaaaatggacttctctaattaaacttctttcataaaaatcccatgacatttttcacttttttgaacgcttacttaactcaaggtagcata |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10638866 |
ataattctacgaaaatggacttctctaattaaacttctttcataaaaatcccatgacctttttcgcttttttgaacgcttacttaactcaaggtagcata |
10638767 |
T |
|
| Q |
116 |
acacaattgtcatcaacataaagtaattcaacatctccatatatatcataaacattgctataannnnnnnncctcctttcacgtatttccatcaaatgtg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
10638766 |
acacaattgtcatcaacataaagtaattcaacatctccatatatatcataaacattgctataa-tttttttcttcctttcacgtatttccatcaaatgtg |
10638668 |
T |
|
| Q |
216 |
tcatgatta |
224 |
Q |
| |
|
|||||||| |
|
|
| T |
10638667 |
acatgatta |
10638659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 16 - 224
Target Start/End: Complemental strand, 26662667 - 26662460
Alignment:
| Q |
16 |
ataattctacgaaaatggacttctctaattaaacttctttcataaaaatcccatgacatttttcacttttttgaacgcttacttaactcaaggtagcata |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
26662667 |
ataattctacgaaaatggacttctctaattaaacttctttcataaaaatcccatgacctttttcgcttttttgaacgcttacttaactcaaggtagcata |
26662568 |
T |
|
| Q |
116 |
acacaattgtcatcaacataaagtaattcaacatctccatatatatcataaacattgctataannnnnnnncctcctttcacgtatttccatcaaatgtg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
26662567 |
acacaattgtcatcaacataaagtaattcaacatctccatatatatcataaacattgctataa-tttttttcttcctttcacgtatttccatcaaatgtg |
26662469 |
T |
|
| Q |
216 |
tcatgatta |
224 |
Q |
| |
|
||||||||| |
|
|
| T |
26662468 |
tcatgatta |
26662460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 16 - 224
Target Start/End: Complemental strand, 22902926 - 22902719
Alignment:
| Q |
16 |
ataattctacgaaaatggacttctctaattaaacttctttcataaaaatcccatgacatttttcacttttttgaacgcttacttaactcaaggtagcata |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
22902926 |
ataattctacgaaaatggacttctctaattaaacttctttcataaaaatcccatgacctttttcgcttttttgaacgcttacttaactcaaggtagcata |
22902827 |
T |
|
| Q |
116 |
acacaattgtcatcaacataaagtaattcaacatctccatatatatcataaacattgctataannnnnnnncctcctttcacgtatttccatcaaatgtg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||| |
|
|
| T |
22902826 |
acacaattgtcatcaacataaagtaattcaacatctccatatatatcataaacattgctataa-tttttttcttcttttcacgtatttccatcaaatgtg |
22902728 |
T |
|
| Q |
216 |
tcatgatta |
224 |
Q |
| |
|
||||||||| |
|
|
| T |
22902727 |
tcatgatta |
22902719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 13341341 - 13341546
Alignment:
| Q |
16 |
ataattctacgaaaatggacttctctaattaaacttctttcataaaaatcccatgacatttttcacttttttgaacgcttacttaactcaaggtagcata |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
13341341 |
ataattctacgaaaatggacttctctaactaaacttctttcataaaaattccatgacctttttcgcttttttgaacgcttacttaactcaaggtagcata |
13341440 |
T |
|
| Q |
116 |
acacaattgtcatcaacataaagtaattcaacatctccatatatatcataaacattgctataannnnnnnncctcctttcacgtatttccatcaaatgtg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||| |||||||||||||||| |
|
|
| T |
13341441 |
acacaattgtcatcaacataaagtaattcaacatctccatatatatcataaacattgctataa-tttttttcttcctgtcacgcatttccatcaaatgtg |
13341539 |
T |
|
| Q |
216 |
tcatgat |
222 |
Q |
| |
|
||||||| |
|
|
| T |
13341540 |
tcatgat |
13341546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 13330426 - 13330631
Alignment:
| Q |
16 |
ataattctacgaaaatggacttctctaattaaacttctttcataaaaatcccatgacatttttcacttttttgaacgcttacttaactcaaggtagcata |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
13330426 |
ataattctacgaaaatggacttctctaactaaacttctttcataaaaattccatgacctttttcgctttttcaaacgcttacttaactcaaggtagcata |
13330525 |
T |
|
| Q |
116 |
acacaattgtcatcaacataaagtaattcaacatctccatatatatcataaacattgctataannnnnnnncctcctttcacgtatttccatcaaatgtg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||| |||||||||||||||| |
|
|
| T |
13330526 |
acacaattgtcatcaacataaagtaattcaacatctccatatatatcataaacattgctataa-tttttttcttcctgtcacgcatttccatcaaatgtg |
13330624 |
T |
|
| Q |
216 |
tcatgat |
222 |
Q |
| |
|
||||||| |
|
|
| T |
13330625 |
tcatgat |
13330631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 5670874 - 5671079
Alignment:
| Q |
16 |
ataattctacgaaaatggacttctctaattaaacttctttcataaaaatcccatgacatttttcacttttttgaacgcttacttaactcaaggtagcata |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
5670874 |
ataattctacgaaaatggacttctctaactaaacttctttcataaaaattccatgacctttttcgctttttcaaacgcttacttaactcaaggtagcata |
5670973 |
T |
|
| Q |
116 |
acacaattgtcatcaacataaagtaattcaacatctccatatatatcataaacattgctataannnnnnnncctcctttcacgtatttccatcaaatgtg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||| |||||||||||||||| |
|
|
| T |
5670974 |
acacaattgtcatcaacataaagtaattcaacatctccatatatatcataaacattgctataa-tttttttcttcctgtcacgcatttccatcaaatgtg |
5671072 |
T |
|
| Q |
216 |
tcatgat |
222 |
Q |
| |
|
||||||| |
|
|
| T |
5671073 |
tcatgat |
5671079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 154
Target Start/End: Original strand, 48943908 - 48944046
Alignment:
| Q |
16 |
ataattctacgaaaatggacttctctaattaaacttctttcataaaaatcccatgacatttttcacttttttgaacgcttacttaactcaaggtagcata |
115 |
Q |
| |
|
|||||||| ||||||| |||||||| | |||||| ||||||||| |||||||| | |||||| |||||| |||| ||||||| ||| ||||||| |
|
|
| T |
48943908 |
ataattctttgaaaatgcacttctcttactaaactcctttcataacaatcccatttcctttttcgctttttcaaacgattacttagagcaaaatagcata |
48944007 |
T |
|
| Q |
116 |
acacaattgtcatcaacataaagtaattcaacatctcca |
154 |
Q |
| |
|
||| ||||||||||| |||| ||||||||||||||| |
|
|
| T |
48944008 |
acatcattgtcatcaaagtaaataaattcaacatctcca |
48944046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 154
Target Start/End: Complemental strand, 34148629 - 34148491
Alignment:
| Q |
16 |
ataattctacgaaaatggacttctctaattaaacttctttcataaaaatcccatgacatttttcacttttttgaacgcttacttaactcaaggtagcata |
115 |
Q |
| |
|
|||||||| ||||||| |||||||| | |||||| ||||||||| |||||||| | |||||| |||||| |||| ||||||| ||| ||||||| |
|
|
| T |
34148629 |
ataattctttgaaaatgcacttctcttactaaactcctttcataacaatcccatttcctttttcgctttttcaaacgattacttagagcaaaatagcata |
34148530 |
T |
|
| Q |
116 |
acacaattgtcatcaacataaagtaattcaacatctcca |
154 |
Q |
| |
|
||| ||||||||||| |||| ||||||||||||||| |
|
|
| T |
34148529 |
acatcattgtcatcaaagtaaataaattcaacatctcca |
34148491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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